View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_70 (Length: 316)
Name: NF1836_low_70
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_70 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 853079 - 853366
Alignment:
| Q |
18 |
cagccaaccagaaaccgcgaaggaagcaacagttccatgaatgtcaacttgtttgacagtaactgggtgaagccatgtcacacaatggctaacggctgat |
117 |
Q |
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| T |
853079 |
cagccaaccagaaaccgcgaaggaagcaacggttccatgaatgtcaacttgtttgacagcaactgggtgaagccatgtcatacaatggctaacggctgat |
853178 |
T |
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| Q |
118 |
ttctcactgcatgaaattgcaaattaaaatgatcaaaatcgaattatgtgaccgtctagtctatatgtcatataataataaattgttaacgtgtatttta |
217 |
Q |
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||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
853179 |
ttctcaccgcatgcaaatgcaaattaaaatgatcaaaatcgaattatgtgaccgtctagtctatatgtcatataataataaattgttaacgtgtatttta |
853278 |
T |
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| Q |
218 |
aactaacataaaaggatatttaagtcttacaacaatttttgaaacaggtacaaagtatgtaccaaacatgaaagaatctcatattcat |
305 |
Q |
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||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
853279 |
aactaacataaaaggatatttaagttttgcaacaatttttaaaacaggtacaaagtatgtaccaaacatgaaagaatctcatattcat |
853366 |
T |
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