View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1836_low_71 (Length: 312)

Name: NF1836_low_71
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1836_low_71
NF1836_low_71
[»] chr7 (2 HSPs)
chr7 (1-72)||(2430706-2430777)
chr7 (243-289)||(41772186-41772232)
[»] chr3 (6 HSPs)
chr3 (1-72)||(38888295-38888366)
chr3 (1-72)||(43747869-43747940)
chr3 (1-72)||(46235389-46235460)
chr3 (1-69)||(5175518-5175586)
chr3 (14-69)||(5185806-5185862)
chr3 (8-66)||(5241275-5241334)
[»] chr1 (3 HSPs)
chr1 (1-72)||(8170499-8170570)
chr1 (1-72)||(4796031-4796102)
chr1 (1-69)||(25659089-25659157)
[»] chr8 (3 HSPs)
chr8 (1-72)||(26747849-26747920)
chr8 (1-72)||(27631664-27631735)
chr8 (8-46)||(24100809-24100847)
[»] chr5 (3 HSPs)
chr5 (1-72)||(7529843-7529914)
chr5 (20-72)||(35467931-35467983)
chr5 (1-70)||(9269620-9269688)
[»] chr2 (1 HSPs)
chr2 (1-72)||(5077248-5077319)
[»] chr4 (5 HSPs)
chr4 (1-69)||(49889330-49889398)
chr4 (1-72)||(49233180-49233251)
chr4 (1-72)||(45781780-45781851)
chr4 (23-66)||(30658062-30658105)
chr4 (8-72)||(53921859-53921920)
[»] scaffold0096 (1 HSPs)
scaffold0096 (8-72)||(27890-27954)
[»] scaffold0060 (1 HSPs)
scaffold0060 (1-69)||(67708-67777)


Alignment Details
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 2430777 - 2430706
Alignment:
Q  1 agaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaagga 72  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||    
T  2430777 agaagacaaaaatgtctaatatgccattgattttttaattaatcataaattataatgttgtcttattaagga 2430706  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 289
Target Start/End: Original strand, 41772186 - 41772232
Alignment:
Q  243 ccctaaatgtttcgctcagagtgtgtgtttattctttgatcatgttc 289  Q
    |||||| |||||||||| |||||||||||||||||||||||| ||||    
T  41772186 ccctaagtgtttcgctctgagtgtgtgtttattctttgatcaagttc 41772232  T

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Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 38888295 - 38888366
Alignment:
Q  1 agaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaagga 72  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38888295 agaagacaaaaaagtctattatgccattggttttttaattaatcataaattataatgttgtcttatcaagga 38888366  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 43747940 - 43747869
Alignment:
Q  1 agaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaagga 72  Q
    |||||||||||| ||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  43747940 agaagacaaaaaagtctattatgccattggttttttaattattcataaattataatgttgtcttatcaagga 43747869  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 46235389 - 46235460
Alignment:
Q  1 agaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaagga 72  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  46235389 agaagacaaaaaagtctattatgccattggttttttaattaatcataaattataatgatgtcttatcaagga 46235460  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 5175518 - 5175586
Alignment:
Q  1 agaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaa 69  Q
    |||||| ||||| |||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||    
T  5175518 agaagataaaaaagtctaatatgtcattggtttttcaattaatcataaattataatgttgtcttatcaa 5175586  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 5185806 - 5185862
Alignment:
Q  14 gtctaatatgccattggtttttt-aattaatcataaattataattttgtcttatcaa 69  Q
    ||||||||| ||||||||||||| |||||||||||||||||||| ||| ||||||||    
T  5185806 gtctaatataccattggttttttcaattaatcataaattataatattggcttatcaa 5185862  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 5241275 - 5241334
Alignment:
Q  8 aaaaatgtctaatatgccattggttttt-taattaatcataaattataattttgtcttat 66  Q
    ||||||||||||||| |||||| |||||  |||||||||| ||||||||| |||||||||    
T  5241275 aaaaatgtctaatataccattgatttttgcaattaatcatcaattataatattgtcttat 5241334  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 8170570 - 8170499
Alignment:
Q  1 agaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaagga 72  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||    
T  8170570 agaagacaaaaatgtctaatatgccattgatttttcaattaatcataaattataatgttgtcttatcaagga 8170499  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 4796102 - 4796031
Alignment:
Q  1 agaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaagga 72  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| ||||||||||    
T  4796102 agaagacaaaaatgtctaatatgccattgatttttcaattaatcataaattataatgttgttttatcaagga 4796031  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 25659157 - 25659089
Alignment:
Q  1 agaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaa 69  Q
    |||||||||||| ||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  25659157 agaagacaaaaaagtctattatgtcattggttttttaattaatcataaattataatgttgtcttatcaa 25659089  T

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Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 26747849 - 26747920
Alignment:
Q  1 agaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaagga 72  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  26747849 agaagacaaaaaagtctattatgccattggttttttaattaatcataaattagaatgttgtcttatcaagga 26747920  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 27631735 - 27631664
Alignment:
Q  1 agaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaagga 72  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||| | |||| || |||||| |||||    
T  27631735 agaagacaaaaaagtctattatgccattggttttttaattaatcataaagtgtaatgttatcttattaagga 27631664  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 24100847 - 24100809
Alignment:
Q  8 aaaaatgtctaatatgccattggttttttaattaatcat 46  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  24100847 aaaaatgtctaatatgccattgattttttaattaatcat 24100809  T

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Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 7529914 - 7529843
Alignment:
Q  1 agaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaagga 72  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||  ||||| |||||||||||||||    
T  7529914 agaagacaaaaaagtctaatatgccattgattttttaattaatcataaaaaataatgttgtcttatcaagga 7529843  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 35467931 - 35467983
Alignment:
Q  20 tatgccattggttttttaattaatcataaattataattttgtcttatcaagga 72  Q
    |||||||||| |||||||||||||||||||||||||| |||| ||||||||||    
T  35467931 tatgccattgattttttaattaatcataaattataatgttgttttatcaagga 35467983  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 9269688 - 9269620
Alignment:
Q  1 agaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaag 70  Q
    |||||||||||| || | |||||  |||||||||| |||||||||||||||||||| |||||||||||||    
T  9269688 agaagacaaaaaagtatgatatgttattggttttt-aattaatcataaattataatgttgtcttatcaag 9269620  T

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Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 5077319 - 5077248
Alignment:
Q  1 agaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaagga 72  Q
    |||||||||||| |||||||||| ||||| ||||||||||||||||||||||| || |||||||||||||||    
T  5077319 agaagacaaaaaagtctaatatgtcattgattttttaattaatcataaattatgatgttgtcttatcaagga 5077248  T

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Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 49889398 - 49889330
Alignment:
Q  1 agaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaa 69  Q
    ||||||||||||| ||||||||| ||||  |||||||||||||||||||||||||| ||||||||||||    
T  49889398 agaagacaaaaatatctaatatgtcattaattttttaattaatcataaattataatgttgtcttatcaa 49889330  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 49233180 - 49233251
Alignment:
Q  1 agaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaagga 72  Q
    |||||||||||| || || |||||| |||||||||||||| ||||||||||||||| |||||||||||||||    
T  49233180 agaagacaaaaaagtttattatgccgttggttttttaattgatcataaattataatgttgtcttatcaagga 49233251  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 45781780 - 45781851
Alignment:
Q  1 agaagacaaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaagga 72  Q
    |||||||||||| || || |||| ||||||||||||||||||||||||||| |||| || ||||||||||||    
T  45781780 agaagacaaaaaagtttattatgtcattggttttttaattaatcataaattgtaatgttatcttatcaagga 45781851  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 30658062 - 30658105
Alignment:
Q  23 gccattggttttttaattaatcataaattataattttgtcttat 66  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  30658062 gccattggttttttaattaatcataaattataatgttgtcttat 30658105  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 53921859 - 53921920
Alignment:
Q  8 aaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaagga 72  Q
    ||||| |||||||||| ||||||||||||||   ||||||||||||||| |||||||||||||||    
T  53921859 aaaaaagtctaatatgtcattggttttttaa---atcataaattataatgttgtcttatcaagga 53921920  T

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Target: scaffold0096 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 27890 - 27954
Alignment:
Q  8 aaaaatgtctaatatgccattggttttttaattaatcataaattataattttgtcttatcaagga 72  Q
    ||||| ||||| ||||||||||||| |||||||||| |||||||||||| |||||||||||||||    
T  27890 aaaaaagtctattatgccattggttatttaattaattataaattataatgttgtcttatcaagga 27954  T

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Target: scaffold0060 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 67708 - 67777
Alignment:
Q  1 agaagacaaaaatgtctaatatgccattggtttt-ttaattaatcataaattataattttgtcttatcaa 69  Q
    |||||||||||| ||||| |||||| |||||||| |||||||||||||||||||| | ||||||||||||    
T  67708 agaagacaaaaaagtctattatgccgttggtttttttaattaatcataaattatattgttgtcttatcaa 67777  T

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