View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_77 (Length: 294)
Name: NF1836_low_77
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_77 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 45683283 - 45683557
Alignment:
| Q |
1 |
caatagcaagcaaaacaagctcatgatcgggtaaggaccactggtctaaatcctcttccttggatggaattttttccaattcgtatgatctgtatgcaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45683283 |
caatagcaagcaaaacaagctcatgatcgggtaaggaccactggtctaaatcctcttccttggatggaattttttccaattcgtatgatctgtatgcaat |
45683382 |
T |
|
| Q |
101 |
agcaatacaacgcaagctctgggcagccatgtcatcaattgcctttctgaagaatgcctgaagattattgaatgaatattacacatttagaaaagtgctg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45683383 |
agcaatacaacgcaagctctgggcagccatgtcatcaattgcctttctgaagaatgcctgaagattattaaatgaatattacacatttagaaaagtgctg |
45683482 |
T |
|
| Q |
201 |
aaaatattatgaactgctatcagttgctatattttaggtactgatatataattgcatacaatcagagtaacttga |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
45683483 |
aaaatattatgaactgctatcagttgctatattttaggtactgatatataattgcttacaatcagagtaacttga |
45683557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 1443991 - 1443848
Alignment:
| Q |
1 |
caatagcaagcaaaacaagctcatgatcgggtaaggaccactggtctaaatcctcttccttggatggaattttttccaattcgtatgatctgtatgcaat |
100 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||| ||| |||||||||| || || ||||||||||| || ||||| || |||||||||||||| |
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| T |
1443991 |
caatagcaagcaaaacaagctcatcttctggtaaggaccattgggctaaatcctcctcattagatggaattttgtctaattcatacgatctgtatgcaat |
1443892 |
T |
|
| Q |
101 |
agcaatacaacgcaagctctgggcagccatgtcatcaattgcct |
144 |
Q |
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||||| ||||||||| || | ||||||||||||||||| |||| |
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| T |
1443891 |
agcaacacaacgcaaactgcgagcagccatgtcatcaatagcct |
1443848 |
T |
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