View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_8 (Length: 699)
Name: NF1836_low_8
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-157; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 400 - 681
Target Start/End: Complemental strand, 40326895 - 40326614
Alignment:
| Q |
400 |
tgataatatttttcataaaaaggagtaaacatgaattgtgcaactaaaaatatttaaaagcatgccacatacatacccatatttgtgatgttctccactc |
499 |
Q |
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| T |
40326895 |
tgataatatttttcataaaaaggagtaaacatgaattgtgcaactaaaaatatttaaaagcatgccacatacatacccatatttgtgatgttctccactc |
40326796 |
T |
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| Q |
500 |
aagttagcaacttcacataaagctgacctccatttattcaccttttcagagtcatttccaaactcttcttcatgcttagtcatggcttttccataactat |
599 |
Q |
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| T |
40326795 |
aagttagcaacttcacataaagctgacctccatttattcaccttttcagagtcatttccaaactcttcttcatgcttagtcatggcttttccataactat |
40326696 |
T |
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| Q |
600 |
ttctctgatgtcttacccaagatggttctattttgtaaaagattggcaaaatctgttggttcttcctctccttgcactttag |
681 |
Q |
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| T |
40326695 |
ttctctgatgtcttacccaagatggttctattttgtaaaagattggcaaaatctgttggttcttcctctccttgcactttag |
40326614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 196 - 407
Target Start/End: Complemental strand, 40327444 - 40327233
Alignment:
| Q |
196 |
attgaatttgacacgattaagtttggcttcgtattctttccacgatcttttggactagtttatattcgtacctgcaaaatcaaagacttgttaattcatg |
295 |
Q |
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| T |
40327444 |
attgaatttgacacgattaagtttggcttcgtattctttccacgatcttttggactagtttatattcgtacctgcaaaatcaaagacttgttaattcatg |
40327345 |
T |
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| Q |
296 |
tattgcacaaagttttcatattatctattaatcaaagttcattcagttaaaataatatataaaattaaaattaaccttcacaaaatagaaatttgcactt |
395 |
Q |
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| T |
40327344 |
tattgcacaaagttttcatattatctattaatcaaagttcattcggttaaaagaatatataaaattaaaattaaccttcacaaaattgaaatttgcactt |
40327245 |
T |
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| Q |
396 |
gaactgataata |
407 |
Q |
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| T |
40327244 |
gaactgaaaata |
40327233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 11 - 198
Target Start/End: Complemental strand, 40327680 - 40327493
Alignment:
| Q |
11 |
ttattcttcattagatgcagtgatatcaaaacttgtgcatatatatttataaagagacggtactatacaatttcagaaaacaaaatcaccgaaaatctta |
110 |
Q |
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| T |
40327680 |
ttattcttcattagatgcagtcatatcaaaacttgtgcatatatatttataaaaagacggtactatacaatttcagaaaacaaaatcaccgaaaatctta |
40327581 |
T |
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| Q |
111 |
aactaattatcgatcaaggaacatggaacgtgttgaaaacatcttataacacttacaacttcacatgattcatggaatatttatcatt |
198 |
Q |
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| T |
40327580 |
aactaattatcgatcaaggaacatgaaacgtgttgaaaacaacttataacacttacaacttcacatgattcatggaatatttatcatt |
40327493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 498 - 664
Target Start/End: Complemental strand, 40283869 - 40283703
Alignment:
| Q |
498 |
tcaagttagcaacttcacataaagctgacctccatttattcaccttttcagagtcatttccaaactcttcttcatgcttagtcatggcttttccataact |
597 |
Q |
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||||||||||||||||| |||||||||||||||||| || ||||| |||||||||||||||||||||| || |||||||| ||||||| || ||| || |
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| T |
40283869 |
tcaagttagcaacttcagataaagctgacctccattcctttaccttctcagagtcatttccaaactcttttttatgcttagccatggctcttttatagct |
40283770 |
T |
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| Q |
598 |
atttctctgatgtcttacccaagatggttctattttgtaaaagattggcaaaatctgttggttcttc |
664 |
Q |
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| T |
40283769 |
gtttttctgatgccttacatcggacggttctattttgtaaaagattggcaaaaccttttggttcttc |
40283703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 200 - 282
Target Start/End: Complemental strand, 40311780 - 40311698
Alignment:
| Q |
200 |
aatttgacacgattaagtttggcttcgtattctttccacgatcttttggactagtttatattcgtacctgcaaaatcaaagac |
282 |
Q |
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| T |
40311780 |
aatttgacaccattaaatttggctctttactctttccacgatcgtttggactagtttatattcgtacctgcaaaattaaagac |
40311698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 493 - 664
Target Start/End: Complemental strand, 40311522 - 40311351
Alignment:
| Q |
493 |
tccactcaagttagcaacttcacataaagctgacctccatttattcaccttttcagagtcatttccaaactcttcttcatgcttagtcatggcttttcca |
592 |
Q |
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|||||||||| ||||||||||| |||||||||||||||| | | | ||| ||| ||||||| |||||| || | | || |||| ||| || || || |
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| T |
40311522 |
tccactcaagctagcaacttcaagtaaagctgacctccatatctgtaacttctcaaagtcattaccaaacctttttacttgtttagccattcctctttca |
40311423 |
T |
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| Q |
593 |
taactatttctctgatgtcttacccaagatggttctattttgtaaaagattggcaaaatctgttggttcttc |
664 |
Q |
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| T |
40311422 |
taactgtttttctgatgccttacatcggacggttctattttataaaaaatcggcaaaatctgttggttcttc |
40311351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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