View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1836_low_80 (Length: 292)

Name: NF1836_low_80
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1836_low_80
NF1836_low_80
[»] chr7 (5 HSPs)
chr7 (41-217)||(12105176-12105352)
chr7 (75-215)||(1445999-1446139)
chr7 (154-215)||(1459312-1459373)
chr7 (243-275)||(12105380-12105412)
chr7 (41-110)||(12094598-12094664)
[»] chr6 (1 HSPs)
chr6 (79-206)||(10116745-10116872)
[»] chr3 (1 HSPs)
chr3 (69-216)||(45810474-45810621)
[»] chr2 (6 HSPs)
chr2 (153-215)||(965454-965516)
chr2 (153-216)||(410269-410332)
chr2 (153-199)||(974016-974062)
chr2 (91-195)||(982089-982193)
chr2 (153-216)||(821163-821226)
chr2 (69-216)||(1403193-1403340)


Alignment Details
Target: chr7 (Bit Score: 121; Significance: 5e-62; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 41 - 217
Target Start/End: Original strand, 12105176 - 12105352
Alignment:
Q  41 aaataatgtagtggtcttatcgaggttgtgaccttcctatattccataatttgactcatctggtgctctgttatgattgggatatagttacaggagtgtt 140  Q
    ||||||||||||||||||||||||||||  | ||||||| ||||||||||||||||||| |||||||||| ||| |||||||||||||| || || || |    
T  12105176 aaataatgtagtggtcttatcgaggttgcaaacttcctacattccataatttgactcatttggtgctctgctataattgggatatagttccaagaatgct 12105275  T
Q  141 gtacctttgtagtaagcttcaaaatcttgacctttttcaggtttgtttcttaaatttaacaatcatatttgatttaa 217  Q
    | ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12105276 gcacctttgtcctaagcttcaaaatcttgacctttttcaggtttgtttcttaaatttaacaatcatatttgatttaa 12105352  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 75 - 215
Target Start/End: Complemental strand, 1446139 - 1445999
Alignment:
Q  75 tcctatattccataatttgactcatctggtgctctgttatgattgggatatagttacaggagtgttgtacctttgtagtaagcttcaaaatcttgacctt 174  Q
    ||||| ||||||||||||||||||| |||||||| | ||   ||||| |||||||  | | ||| | ||||||||   ||||||||||||| ||||  ||    
T  1446139 tcctacattccataatttgactcatttggtgctcagctacagttggggtatagttcaacgtgtgctctacctttgccctaagcttcaaaatattgaattt 1446040  T
Q  175 tttcaggtttgtttcttaaatttaacaatcatatttgattt 215  Q
    | ||||||||||||||||| |||||||||| ||||||||||    
T  1446039 tatcaggtttgtttcttaattttaacaatcgtatttgattt 1445999  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 1459373 - 1459312
Alignment:
Q  154 aagcttcaaaatcttgacctttttcaggtttgtttcttaaatttaacaatcatatttgattt 215  Q
    |||||||||| |||||| |||| ||||||||||||||||| ||||||||| |||||||||||    
T  1459373 aagcttcaaactcttgaactttatcaggtttgtttcttaattttaacaattatatttgattt 1459312  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 275
Target Start/End: Original strand, 12105380 - 12105412
Alignment:
Q  243 aacatacaagtatgtatcaatttatttcttttg 275  Q
    |||||||||||||||||||||||||||||||||    
T  12105380 aacatacaagtatgtatcaatttatttcttttg 12105412  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 110
Target Start/End: Original strand, 12094598 - 12094664
Alignment:
Q  41 aaataatgtagtggtcttatcgaggttgtgaccttcctatattccataatttgactcatctggtgctctg 110  Q
    |||||||||||||   |||||||||||| || |||||||  |||||||||||||||||| ||||| ||||    
T  12094598 aaataatgtagtg---ttatcgaggttgcgaacttcctacgttccataatttgactcatttggtgatctg 12094664  T

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Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 79 - 206
Target Start/End: Complemental strand, 10116872 - 10116745
Alignment:
Q  79 atattccataatttgactcatctggtgctctgttatgattgggatatagttacaggagtgttgtacctttgtagtaagcttcaaaatcttgacctttttc 178  Q
    ||||||||||||||||||||| ||||||||   ||||||||||||||||||  |  |||| |  ||| |||   ||| |||||||||||||| |||| ||    
T  10116872 atattccataatttgactcatttggtgctcctctatgattgggatatagttgtacaagtgctccaccattgccctaaccttcaaaatcttgaactttatc 10116773  T
Q  179 aggtttgtttcttaaatttaacaatcat 206  Q
    |||||||||| |||||||||||||||||    
T  10116772 aggtttgtttgttaaatttaacaatcat 10116745  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 216
Target Start/End: Complemental strand, 45810621 - 45810474
Alignment:
Q  69 tgaccttcctatattccataatttgactcatctggtgctctgttatgattgggatatagttacaggagtgttgtacctttgtagtaagcttcaaaatctt 168  Q
    |||| |||||| |||| |||||||||||||| ||||| ||   ||||||||||||||||||  |  |||| |  | | ||||  ||||||||||| |||     
T  45810621 tgactttcctacattcaataatttgactcatttggtggtcaactatgattgggatatagttgtacaagtgcttcagcattgtcctaagcttcaaagtctc 45810522  T
Q  169 gacctttttcaggtttgtttcttaaatttaacaatcatatttgattta 216  Q
    ||||||| ||||||||| || ||||||||||| |||||||||||||||    
T  45810521 gacctttatcaggtttgcttgttaaatttaacgatcatatttgattta 45810474  T

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Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 965516 - 965454
Alignment:
Q  153 taagcttcaaaatcttgacctttttcaggtttgtttcttaaatttaacaatcatatttgattt 215  Q
    |||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| |||||    
T  965516 taagcttcaaaatcttgaactttatcaggtttgtttgttaaatttaacaatcatattcgattt 965454  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 153 - 216
Target Start/End: Original strand, 410269 - 410332
Alignment:
Q  153 taagcttcaaaatcttgacctttttcaggtttgtttcttaaatttaacaatcatatttgattta 216  Q
    |||||||||||||||||| |||| || ||||||||| |||||||||| ||||||||||||||||    
T  410269 taagcttcaaaatcttgaactttatcgggtttgtttgttaaatttaagaatcatatttgattta 410332  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 974062 - 974016
Alignment:
Q  153 taagcttcaaaatcttgacctttttcaggtttgtttcttaaatttaa 199  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||    
T  974062 taagcttcaaaatcttgacctttatcaggtttgtttgttaaatttaa 974016  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 91 - 195
Target Start/End: Complemental strand, 982193 - 982089
Alignment:
Q  91 ttgactcatctggtgctctgttatgattgggatatagttacaggagtgttgtacctttgtagtaagcttcaaaatcttgacctttttcaggtttgtttct 190  Q
    ||||||||| ||||||||   ||||||||| ||||||||  | ||||| |  ||| |||   ||||||||||||||||||||||| |||||||||||| |    
T  982193 ttgactcatttggtgctcaactatgattggaatatagttgtacgagtgctccaccattgctttaagcttcaaaatcttgacctttatcaggtttgtttgt 982094  T
Q  191 taaat 195  Q
    |||||    
T  982093 taaat 982089  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 216
Target Start/End: Original strand, 821163 - 821226
Alignment:
Q  153 taagcttcaaaatcttgacctttttcaggtttgtttcttaaatttaacaatcatatttgattta 216  Q
    |||||||||||||||||| |||| ||||||||| || |||| ||||| |||| |||||||||||    
T  821163 taagcttcaaaatcttgaactttatcaggtttgcttgttaagtttaagaatcctatttgattta 821226  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 216
Target Start/End: Original strand, 1403193 - 1403340
Alignment:
Q  69 tgaccttcctatattccataatttgactcatctggtgctctgttatgattgggatatagttacaggagtgttgtacctttgtagtaagcttcaaaatctt 168  Q
    |||| |||||| ||||||||||||||||||||||||||||   ||| | || |||||| ||  |  |||| | |||| |||   ||||||||||||||||    
T  1403193 tgactttcctacattccataatttgactcatctggtgctcaactataactgtgatataattgtacaagtgctctaccattgccctaagcttcaaaatctt 1403292  T
Q  169 gacctttttcaggtttgtttcttaaatttaacaatcatatttgattta 216  Q
    ||| ||| | |||| ||| |||||||| ||| || | |||||||||||    
T  1403293 gacttttatgaggtatgtgtcttaaatataagaaacttatttgattta 1403340  T

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