View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_81 (Length: 287)
Name: NF1836_low_81
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_81 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 25 - 233
Target Start/End: Complemental strand, 50005880 - 50005676
Alignment:
| Q |
25 |
taccagccagcagcctccatggctttgatgagatctttcttcttcggaactctcttaatatcaatcttgatgtcagtgagtgagagcctcttgaaattta |
124 |
Q |
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| T |
50005880 |
taccaaccagcagcttccatggctttgatgagatccttcttcttcggaactctcttaatatcgatcttgatgtctgtgagtgagagcctcttgaaattta |
50005781 |
T |
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| Q |
125 |
tagggggcctctccatatcaggagcatcaacaagagcctgtcaacatatagtacacaaattcagtaatggatcaagaaatttttacttgtgggggcaaac |
224 |
Q |
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| T |
50005780 |
taggggacctctccatatcaggagcatcaacaagagcctggcaacatatagtacacaaattcagtgatggatcaagaaactt----ttgtgggggcaaat |
50005685 |
T |
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| Q |
225 |
ttaatttgc |
233 |
Q |
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||||||||| |
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| T |
50005684 |
ttaatttgc |
50005676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 164 - 238
Target Start/End: Complemental strand, 50070713 - 50070639
Alignment:
| Q |
164 |
gtcaacatatagtacacaaattcagtaatggatcaagaaatttttacttgtgggggcaaacttaatttgcttgtg |
238 |
Q |
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| T |
50070713 |
gtcaacatatagtacacaaattcagtaatggatcaagaaatttttgtttgtgggggcaaacttaatttgcttgtg |
50070639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 237 - 286
Target Start/End: Complemental strand, 50078980 - 50078931
Alignment:
| Q |
237 |
tgatgaagcaaacttgggatataactatagtatagttggaggagtcgggt |
286 |
Q |
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| T |
50078980 |
tgatgaagcaaacttgggatataactatagtatagttggaggagtcgggt |
50078931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 286
Target Start/End: Complemental strand, 50070557 - 50070528
Alignment:
| Q |
257 |
ataactatagtatagttggaggagtcgggt |
286 |
Q |
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| T |
50070557 |
ataactatagtatagttggaggagtcgggt |
50070528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 34 - 164
Target Start/End: Complemental strand, 33548422 - 33548292
Alignment:
| Q |
34 |
gcagcctccatggctttgatgagatctttcttcttcggaactctcttaatatcaatcttgatgtcagtgagtgagagcctcttgaaatttatagggggcc |
133 |
Q |
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| T |
33548422 |
gcagcttccatggctttgacgagatccttcttcttaggaaccctcttgatatcaatcttgatatcagttagagaaagcctcttgaaattgattgggactc |
33548323 |
T |
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| Q |
134 |
tctccatatcaggagcatcaacaagagcctg |
164 |
Q |
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| T |
33548322 |
tctccatgtcaggtgcatcaacaagagcctg |
33548292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 237 - 286
Target Start/End: Complemental strand, 10797390 - 10797341
Alignment:
| Q |
237 |
tgatgaagcaaacttgggatataactatagtatagttggaggagtcgggt |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10797390 |
tgatgaagcaaacttgggatataactatagtatagttggaggagtcgggt |
10797341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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