View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_87 (Length: 280)
Name: NF1836_low_87
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_87 |
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Alignment Details
Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 298918 - 298850
Alignment:
| Q |
18 |
ccaatatatatagatatagtatagcttggtgaggagcagttgtaacaaaacatctctgggtcaagatcc |
86 |
Q |
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| T |
298918 |
ccaatatatatagatatagcatagcttggtgaggagcagttgtaacaaaacatctctgggtcaagatcc |
298850 |
T |
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Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 206 - 273
Target Start/End: Complemental strand, 298766 - 298699
Alignment:
| Q |
206 |
aatgcctaatttgtcccgtgtaacacacctaaatctgatactatgtgggatatatattgcctttgctt |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
298766 |
aatgcctaatttgtcccgtgtaacacacctaaatctgatactatgtgggatatatattggcttggctt |
298699 |
T |
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