View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_89 (Length: 275)
Name: NF1836_low_89
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_89 |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 8e-64; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 104 - 268
Target Start/End: Complemental strand, 50070016 - 50069856
Alignment:
| Q |
104 |
tttgtgtcttcttaatcttccaatgtaatcctccaacttaccaagccttcctactatcgtcattaaacatgagtgtgcttcccagtttgttgttgttttc |
203 |
Q |
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| T |
50070016 |
tttgtgtcttcttaatcttccaatgtaatcctccaacttaccaagccttcctactatcgtca----acatgagtgtgcttcccaatttgttgttgttttc |
50069921 |
T |
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| Q |
204 |
ttaatttaagttagcttaatttctgttgaaataaagtgttcacttgttaatttctccctttgcta |
268 |
Q |
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| T |
50069920 |
ttaatttaagttagcttaatttccgttaaaataaattgatcacttgttaatttctccttttgcta |
50069856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 50070358 - 50070248
Alignment:
| Q |
1 |
tgagggttatgttttggccaatcctaattacaactaatccatcctccaatttaccaagtctagctactatcatcactaaacatgaccgtgcttgctagtt |
100 |
Q |
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| T |
50070358 |
tgagggttatgttttggccaatcctaattacaactaatccatcctccaatttaccaagtctagctactatcatcagtgaacatgagtgttcttgctagtt |
50070259 |
T |
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| Q |
101 |
gtttttgtgtc |
111 |
Q |
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| T |
50070258 |
ttctttgtgtc |
50070248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 131 - 268
Target Start/End: Complemental strand, 50075995 - 50075872
Alignment:
| Q |
131 |
atcctccaacttaccaagccttcctactatcgtcattaaacatgagtgtgcttcccagtttgttgttgttttcttaatttaagttagcttaatttctgtt |
230 |
Q |
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| T |
50075995 |
atcctccaacttaccaagccttcctactatcgtcattaaaaatgagtgtgcttgtcagtttgttgttgttttcttaatttaagt--------------tt |
50075910 |
T |
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| Q |
231 |
gaaataaagtgttcacttgttaatttctccctttgcta |
268 |
Q |
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| T |
50075909 |
gaaataaagtgttcacttgttaatttctccttttgcta |
50075872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 50078761 - 50078703
Alignment:
| Q |
1 |
tgagggttatgttttggccaatcctaattacaactaatccatcctccaatttaccaagt |
59 |
Q |
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| T |
50078761 |
tgagggttatgttttggccaatcctaattacaactaatccatcctccaatttaccaagt |
50078703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 50078704 - 50078660
Alignment:
| Q |
88 |
gtgcttgctagttgtttttgtgtcttcttaatcttccaatgtaat |
132 |
Q |
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| T |
50078704 |
gtgcttgctagttgtttttgtgtcttcttaatcttccaatgtaat |
50078660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 10797171 - 10797113
Alignment:
| Q |
1 |
tgagggttatgttttggccaatcctaattacaactaatccatcctccaatttaccaagt |
59 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10797171 |
tgagggttatgttttggccaatcctaattacaactaatccatcctccaatttaccaagt |
10797113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 10797114 - 10797070
Alignment:
| Q |
88 |
gtgcttgctagttgtttttgtgtcttcttaatcttccaatgtaat |
132 |
Q |
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| T |
10797114 |
gtgcttgctagttgtttttgtgtcttcttaatcttccaatgtaat |
10797070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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