View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_90 (Length: 273)
Name: NF1836_low_90
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_90 |
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Alignment Details
Target: chr1 (Bit Score: 108; Significance: 3e-54; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 45121892 - 45121999
Alignment:
| Q |
16 |
aatatgtcgggtttattatcttttatattttaatacgtttaattacaatgtcatataacatgcaatgtatataagaatgatcaagggtaaaaaatgttgg |
115 |
Q |
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| T |
45121892 |
aatatgtcgggtttattatcttttatattttaatacgtttaattacaatgtcatataacatgcaatgtatataagaatgatcaagggtaaaaaatgttgg |
45121991 |
T |
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| Q |
116 |
gcttataa |
123 |
Q |
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|||||||| |
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| T |
45121992 |
gcttataa |
45121999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 161 - 268
Target Start/End: Original strand, 45122166 - 45122273
Alignment:
| Q |
161 |
atacatattttttactcggtaataaaatctctacactaacattctttttgagcaatattcaagtgcccgagtgttgatattataaatcaatactaagttc |
260 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
45122166 |
atacatattttttactcagtaataaaatctctacactaacattctttttgagcaatattcaagtggccgagtgttgatattataaatcaatgctaagttc |
45122265 |
T |
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| Q |
261 |
ttctcact |
268 |
Q |
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|||||||| |
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| T |
45122266 |
ttctcact |
45122273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 45122028 - 45122085
Alignment:
| Q |
118 |
ttataaaaaatatagtataaatagtttttgcatcagacactgaatacatattttttac |
175 |
Q |
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| T |
45122028 |
ttataaaaaatatagtataaatagtttttgcatcagacactgaatacatattttttac |
45122085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 45122628 - 45122693
Alignment:
| Q |
28 |
ttattatcttttatattttaatacgtttaattacaatgtcatataacatgcaatgtatataagaat |
93 |
Q |
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| T |
45122628 |
ttattatcttttatatttcaatacatttaattgcattgtcatataacatgcgatgtatataagaat |
45122693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 100
Target Start/End: Original strand, 45122692 - 45122750
Alignment:
| Q |
42 |
attttaatacgtttaattacaatgtcatataacatgcaatgtatataagaatgatcaag |
100 |
Q |
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|||| ||||| ||||||| |||||||||| ||||||||| ||||||||||||||||||| |
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| T |
45122692 |
atttcaatacatttaattgcaatgtcataaaacatgcaaagtatataagaatgatcaag |
45122750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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