View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_91 (Length: 272)
Name: NF1836_low_91
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_91 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 10 - 253
Target Start/End: Complemental strand, 4050810 - 4050568
Alignment:
| Q |
10 |
attatactgtgattgtgttagaaagaaattacaaatatgatnnnnnnntgcaaatgaaacggatgaatttaccaaagtcttaggtattcatcataggtat |
109 |
Q |
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| T |
4050810 |
attatactgtgattgtgttagaaagaaattacaaatatgataaacaaatgcaaatgaaacggatgaatttaccaaagtcttaggtattcatcataggtat |
4050711 |
T |
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| Q |
110 |
atggtaggaactaacttttactaataaaacaatgaagactaacttctatagcattttgtttgttccatcatcttctaatagttctttttcaatagctgca |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4050710 |
atggtaggaactaacttttactaataaaacaatgaagact-acttctatagcattttgtttgttccatcatcttctaatagttctttttcaatagctgca |
4050612 |
T |
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| Q |
210 |
tttcaaatttctggatcgtgatcaatcagtgttgttaaccgcgg |
253 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4050611 |
tttcaaatttctggatcgtgatatctcagtgttgttaaccgcgg |
4050568 |
T |
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