View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_92 (Length: 268)
Name: NF1836_low_92
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_92 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 90 - 268
Target Start/End: Complemental strand, 47426306 - 47426128
Alignment:
| Q |
90 |
aagaaaaactaaattttatttgttgtgtctatattaattattcgtctctacacatgacacgcccttcaaacacactgctaaaagtatacggtactacaaa |
189 |
Q |
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| T |
47426306 |
aagaaaaactaaattttatttgttgtgtctatattaactattcgtctctacacatgacacgcccttcaaacacactgctaaaagtatacggtactacaaa |
47426207 |
T |
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| Q |
190 |
cccgatatgctaaccaagacaccaagtacgcatcaagtgtctaaaagatcaagtaataagaaatccagtgccatttact |
268 |
Q |
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| T |
47426206 |
cccgatatgctaaccaagacaccaagtacgcatcaagtgtctaaaagatcaagtaataagaaatccaatgccatttact |
47426128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 6607438 - 6607402
Alignment:
| Q |
2 |
tggttgataatgtcaccaaccacaatgtcacctaagt |
38 |
Q |
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| T |
6607438 |
tggttggtaatgtcaccaaccacaatgtcacctaagt |
6607402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 38
Target Start/End: Original strand, 31012258 - 31012287
Alignment:
| Q |
9 |
taatgtcaccaaccacaatgtcacctaagt |
38 |
Q |
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| T |
31012258 |
taatgtcaccaaccacaatgtcacctaagt |
31012287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 53261124 - 53261096
Alignment:
| Q |
10 |
aatgtcaccaaccacaatgtcacctaagt |
38 |
Q |
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| T |
53261124 |
aatgtcaccaaccacaatgtcacctaagt |
53261096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 54613059 - 54613023
Alignment:
| Q |
9 |
taatgtcaccaaccacaatgtcacctaagttcaaccc |
45 |
Q |
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| T |
54613059 |
taatgtcaccaaccacaatgtcacccaagttctaccc |
54613023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 15928116 - 15928080
Alignment:
| Q |
2 |
tggttgataatgtcaccaaccacaatgtcacctaagt |
38 |
Q |
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||||||||||||||||||| |||||||||||| |||| |
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| T |
15928116 |
tggttgataatgtcaccaatcacaatgtcacccaagt |
15928080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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