View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_93 (Length: 265)
Name: NF1836_low_93
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_93 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 43255893 - 43255651
Alignment:
| Q |
1 |
gacttgagaaagggcttggaggttccggcgaaccagcataccctggtggacctatatttaaccctcttggttttggtaaagatgagaaatcattgaaaga |
100 |
Q |
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| T |
43255893 |
gacttgagaaagggcttggaggttccggcgaaccagcataccctggtggacctatatttaaccctcttggttttggtaaagatgagaaatcattgaaaga |
43255794 |
T |
|
| Q |
101 |
attaaagctgaaggaagttaagaatggaagattagctatgttggcaatattgggttactttattcaagctcttgttacaggagttggaccataccaaaac |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43255793 |
attaaagctgaaggaagttaagaatggaaggttagcaatgttggcaatattgggttactttattcaagctcttgttacaggagttggaccataccaaaac |
43255694 |
T |
|
| Q |
201 |
ctcttagatcatttggctgaccctgtcaacaacaacatcttga |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43255693 |
ctcttagatcatttggctgaccctgtcaacaacaacatcttga |
43255651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 43259159 - 43258917
Alignment:
| Q |
1 |
gacttgagaaagggcttggaggttccggcgaaccagcataccctggtggacctatatttaaccctcttggttttggtaaagatgagaaatcattgaaaga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
43259159 |
gacttgagaaagggcttggaggttccggcgaaccagcataccctggtggacctatatttaaccctcttggttttggtaaagatgagaaatcattgaagga |
43259060 |
T |
|
| Q |
101 |
attaaagctgaaggaagttaagaatggaagattagctatgttggcaatattgggttactttattcaagctcttgttacaggagttggaccataccaaaac |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43259059 |
attaaagctgaaggaagttaagaatggaaggttagcaatgttggcaatattgggttactttattcaagctcttgttacaggagttggaccataccaaaac |
43258960 |
T |
|
| Q |
201 |
ctcttagatcatttggctgaccctgtcaacaacaacatcttga |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43258959 |
ctcttagatcatttggctgaccctgtcaacaacaacatcttga |
43258917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 43247896 - 43247654
Alignment:
| Q |
1 |
gacttgagaaagggcttggaggttccggcgaaccagcataccctggtggacctatatttaaccctcttggttttggtaaagatgagaaatcattgaaaga |
100 |
Q |
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||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
43247896 |
gacttgagaaaggtcttggcggttccggtgaaccagcataccctggtggacctatatttaaccctcttggttttggtaaagatgagaaatcattgaagga |
43247797 |
T |
|
| Q |
101 |
attaaagctgaaggaagttaagaatggaagattagctatgttggcaatattgggttactttattcaagctcttgttacaggagttggaccataccaaaac |
200 |
Q |
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|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||| |
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| T |
43247796 |
tttaaagctgaaggaagttaagaatggaaggttagctatgttggcaatattgggttactttgttcaagctctagttacaagagttggaccataccaaaac |
43247697 |
T |
|
| Q |
201 |
ctcttagatcatttggctgaccctgtcaacaacaacatcttga |
243 |
Q |
| |
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||||| ||||||||||||||||| |||||||||||||||| |
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|
| T |
43247696 |
ttcttaaatcatttggctgacccttcaaacaacaacatcttga |
43247654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 146 - 241
Target Start/End: Complemental strand, 43234059 - 43233964
Alignment:
| Q |
146 |
aatattgggttactttattcaagctcttgttacaggagttggaccataccaaaacctcttagatcatttggctgaccctgtcaacaacaacatctt |
241 |
Q |
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|||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
43234059 |
aatactgggtgactttgttcaatctcttgttacaggagttggaccataccaaaacctcttggatcatttggctgaccctttcaacaacaacatctt |
43233964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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