View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1836_low_96 (Length: 256)
Name: NF1836_low_96
Description: NF1836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1836_low_96 |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 32055616 - 32055849
Alignment:
| Q |
1 |
ataagtgtgtactgctcaattattggattggtttaggnnnnnnnnnnntgaaaactaaataaaataggaagcatatcaaagccacatctccttgcgtgaa |
100 |
Q |
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| T |
32055616 |
ataagtgtgtactgctcaattattggattggattag---aaaaaaaaatgaaaactaaataaaataggaagcatatcaaagccacatctccttgcgtgaa |
32055712 |
T |
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| Q |
101 |
atattatttcagtgcctaaaccctctacaggtcagtaatgcctttatattttgtgtgactatcaataaccagacccgttcttga-ggggtgcaaacagtt |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
32055713 |
atattatttcagtgcctaaaccctctacaggtcagtaatgcctctatattttgtgcgactatcaataaccagatccgttcttgagggggtgcaaacagtt |
32055812 |
T |
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| Q |
200 |
caatcgaattggaccatcaataacaatacccacccca |
236 |
Q |
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||| ||||||||||||||||||||||||||||||||| |
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| T |
32055813 |
caaccgaattggaccatcaataacaatacccacccca |
32055849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 52 - 168
Target Start/End: Original strand, 8086348 - 8086464
Alignment:
| Q |
52 |
aaactaaataaaataggaagcatatcaaagccacatctccttgcgtgaaatattatttcagtgcctaaaccctctacaggtcagtaatgcctttatattt |
151 |
Q |
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|||||||| ||| |||| |||||||||| | ||||||||||||| || ||||||||| || ||||||| |||||||| ||||| | | ||||||||||| |
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| T |
8086348 |
aaactaaaaaaattagggagcatatcaacgtcacatctccttgcttggaatattattacaacgcctaaatcctctacatgtcagcatttcctttatattt |
8086447 |
T |
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| Q |
152 |
tgtgtgactatcaataa |
168 |
Q |
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| T |
8086448 |
tgtgtgcccatcaataa |
8086464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 158
Target Start/End: Complemental strand, 30332820 - 30332735
Alignment:
| Q |
73 |
atatcaaagccacatctccttgcgtgaaatattatttcagtgcctaaaccctctacaggtcagtaatgcctttatattttgtgtga |
158 |
Q |
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|||||||||||| ||||| |||| |||||||| ||| |||| ||||| ||| |||| || || | ||||||| |||||||||||| |
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| T |
30332820 |
atatcaaagccatatctcgttgcttgaaatatcattagagtgtctaaatcctttacatgtgagcattgcctttttattttgtgtga |
30332735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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