View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18370_high_2 (Length: 377)
Name: NF18370_high_2
Description: NF18370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18370_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 19 - 370
Target Start/End: Original strand, 33897533 - 33897884
Alignment:
| Q |
19 |
gattattcttcaccaaaaccactcttttttccttcttgcaccccttttcttcacacatacctccatttttaaacactgcacctcccaaaaaagaccacct |
118 |
Q |
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| T |
33897533 |
gattattcttcaccaaaaccactcttttttccttcttgcaccccttttcttcacacatacctccatttttaaacactgcacctcccaaaaaagaccacct |
33897632 |
T |
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| Q |
119 |
atccctgcatgctctcaacttgaaactacccagatgaaaagaattaaactttgggtctaaattggagaaagaaaaggtgggttgtgtcttgtatatgcta |
218 |
Q |
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| T |
33897633 |
atccctgcatgctctcaacttgaaactacccagatgaaaagaattaaactttgggtctaaattggagaaagaaaaagtgggttgtgtcttgtatatgcta |
33897732 |
T |
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| Q |
219 |
tcattgggtttcaagtgtgaaaatttgatggagaattgtacaagagtggacatggggaatattgaataagggtgaagtaaaatcttagtgtacttatgga |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33897733 |
tcattgggtttcaagtgtgaaaatttgatggagaattgtacaagagtggacatggggaatattgaataagggtgaagtaaaatcttagtgtacttatgga |
33897832 |
T |
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| Q |
319 |
gttagaaaaggtttagacatgtcgaatggaacattgcagatgatgatgatgt |
370 |
Q |
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| T |
33897833 |
gttagaaaaggtttagacatgtcgaatggaacattgtagatgatgatgatgt |
33897884 |
T |
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