View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18370_high_3 (Length: 241)

Name: NF18370_high_3
Description: NF18370
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18370_high_3
NF18370_high_3
[»] chr7 (7 HSPs)
chr7 (13-221)||(29743614-29743822)
chr7 (13-221)||(29602435-29602643)
chr7 (13-221)||(29750651-29750859)
chr7 (129-213)||(36221909-36221993)
chr7 (133-211)||(36273765-36273843)
chr7 (120-213)||(36217909-36218002)
chr7 (129-211)||(35957671-35957753)
[»] chr4 (2 HSPs)
chr4 (17-221)||(49352263-49352467)
chr4 (112-221)||(49340982-49341091)
[»] chr5 (1 HSPs)
chr5 (17-221)||(32783802-32784012)
[»] chr1 (2 HSPs)
chr1 (19-221)||(35157775-35157977)
chr1 (92-211)||(18125391-18125510)


Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 29743614 - 29743822
Alignment:
Q  13 gagatgaaggaagtaaagttttagtgactacacgtagccactcaattgctgaaatgatgtgcacaaatacatcatacactttgcaaggtctctctggaaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  29743614 gagatgaaggaagtaaagttttagtgactacacgtagccactcaattgctgaaatgatgtgcacaaatacatcatacactttggaaggtctctctagaaa 29743713  T
Q  113 ggattccttgtctgtatttgtcaaatgggcatttaaagagggagaagacaaaaaatatccaaaattgatagagattgggaaagaaattgtgcaaaaatgt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29743714 ggattccttgtctgtatttgtcaaatgggcatttaaagagggagaagacaaaaaatatccaaaattgatagagattgggaaagaaattgtgcaaaaatgt 29743813  T
Q  213 ggagggctt 221  Q
    |||||||||    
T  29743814 ggagggctt 29743822  T

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Target: chr7; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 29602643 - 29602435
Alignment:
Q  13 gagatgaaggaagtaaagttttagtgactacacgtagccactcaattgctgaaatgatgtgcacaaatacatcatacactttgcaaggtctctctggaaa 112  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||| ||||||||||||||||| ||| || |    
T  29602643 gagatgaaggaagtaaagttttagtgactacacgtagtcactcaattgctaaaatgatgtgcacaaacacatcttacactttgcaaggtctttctagaga 29602544  T
Q  113 ggattccttgtctgtatttgtcaaatgggcatttaaagagggagaagacaaaaaatatccaaaattgatagagattgggaaagaaattgtgcaaaaatgt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29602543 ggattccttgtctgtatttgtcaaatgggcatttaaagagggagaagagaaaaaatatccaaaattgatagagattgggaaagaaattgttcaaaaatgt 29602444  T
Q  213 ggagggctt 221  Q
    |||||||||    
T  29602443 ggagggctt 29602435  T

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Target: chr7; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 29750651 - 29750859
Alignment:
Q  13 gagatgaaggaagtaaagttttagtgactacacgtagccactcaattgctgaaatgatgtgcacaaatacatcatacactttgcaaggtctctctggaaa 112  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||| ||||||||||||||||| ||| || |    
T  29750651 gagatgaaggaagtaaagttttagtgactacacgtagtcactcaattgctaaaatgatgtgcacaaacacatcttacactttgcaaggtctttctagaga 29750750  T
Q  113 ggattccttgtctgtatttgtcaaatgggcatttaaagagggagaagacaaaaaatatccaaaattgatagagattgggaaagaaattgtgcaaaaatgt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29750751 ggattccttgtctgtatttgtcaaatgggcatttaaagagggagaagagaaaaaatatccaaaattgatagagattgggaaagaaattgttcaaaaatgt 29750850  T
Q  213 ggagggctt 221  Q
    |||||||||    
T  29750851 ggagggctt 29750859  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 213
Target Start/End: Original strand, 36221909 - 36221993
Alignment:
Q  129 tttgtcaaatgggcatttaaagagggagaagacaaaaaatatccaaaattgatagagattgggaaagaaattgtgcaaaaatgtg 213  Q
    ||||| ||||||||||||||||| ||||||||  |||||||| ||||  |  | |||||||| |||||||||||| |||||||||    
T  36221909 tttgtgaaatgggcatttaaagacggagaagaagaaaaatattcaaatctagtggagattggaaaagaaattgtgaaaaaatgtg 36221993  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 211
Target Start/End: Original strand, 36273765 - 36273843
Alignment:
Q  133 tcaaatgggcatttaaagagggagaagacaaaaaatatccaaaattgatagagattgggaaagaaattgtgcaaaaatg 211  Q
    ||||||||||||||||||| |||||||| ||||| |||||| | ||| | || ||||||| |||||| ||| |||||||    
T  36273765 tcaaatgggcatttaaagaaggagaagagaaaaagtatccacatttggtggatattgggagagaaatagtgaaaaaatg 36273843  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 213
Target Start/End: Original strand, 36217909 - 36218002
Alignment:
Q  120 ttgtctgtatttgtcaaatgggcatttaaagagggagaagacaaaaaatatccaaaattgatagagattgggaaagaaattgtgcaaaaatgtg 213  Q
    |||||| | ||||| ||||||||||| || || ||||||||  |||||||||||||  |  | |||||||| |||||||||||| |||||||||    
T  36217909 ttgtctctgtttgtgaaatgggcattcaaggatggagaagaagaaaaatatccaaatctagtggagattggaaaagaaattgtgaaaaaatgtg 36218002  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 211
Target Start/End: Complemental strand, 35957753 - 35957671
Alignment:
Q  129 tttgtcaaatgggcatttaaagagggagaagacaaaaaatatccaaaattgatagagattgggaaagaaattgtgcaaaaatg 211  Q
    ||||||||||||||||| || || || ||||| ||||| ||||||||     |||||||||| |||||||||||| |||||||    
T  35957753 tttgtcaaatgggcattcaaggaaggcgaagaaaaaaattatccaaatcaagtagagattggaaaagaaattgtgaaaaaatg 35957671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 49352263 - 49352467
Alignment:
Q  17 tgaaggaagtaaagttttagtgactacacgtagccactcaattgctgaaatgatgtgcacaaatacatcatacactttgcaaggtctctctggaaaggat 116  Q
    ||||| ||||||||| || ||||||||||||||||||||||||||  |||||||| |||| || |||||||||| |||| ||||||| |||  | |||||    
T  49352263 tgaagaaagtaaagtcttggtgactacacgtagccactcaattgccaaaatgatgggcaccaacacatcatacattttggaaggtctttctctagaggat 49352362  T
Q  117 tccttgtctgtatttgtcaaatgggcatttaaagagggagaagacaaaaaatatccaaaattgatagagattgggaaagaaattgtgcaaaaatgtggag 216  Q
    ||||| ||||| |||||||||||||| |||||||||| |||||| |||||||||||| ||||| | |||||||||||||||||||| |||||||||||||    
T  49352363 tccttatctgtgtttgtcaaatgggcttttaaagaggaagaagagaaaaaatatccagaattggtggagattgggaaagaaattgtacaaaaatgtggag 49352462  T
Q  217 ggctt 221  Q
    |||||    
T  49352463 ggctt 49352467  T

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Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 112 - 221
Target Start/End: Original strand, 49340982 - 49341091
Alignment:
Q  112 aggattccttgtctgtatttgtcaaatgggcatttaaagagggagaagacaaaaaatatccaaaattgatagagattgggaaagaaattgtgcaaaaatg 211  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||| || || |||||||||||||| |||||||||||||||||||| ||||||||    
T  49340982 aggattccttgtctgtatttgtcaaatgggcttttgaagagggagaagagaagaactatccaaaattgatggagattgggaaagaaattgtacaaaaatg 49341081  T
Q  212 tggagggctt 221  Q
    ||||||||||    
T  49341082 tggagggctt 49341091  T

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Target: chr5 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 32784012 - 32783802
Alignment:
Q  17 tgaaggaagtaaagttttagtgactacacgtagccactcaattgctgaaatgatgtgcacaaatacatcatacactttgcaa------ggtctctctgga 110  Q
    ||||||||||||||| |||||||||||||||||||||||||||||  |||||||| |||| || |||||||||| |||| ||      ||||| |||       
T  32784012 tgaaggaagtaaagtcttagtgactacacgtagccactcaattgccaaaatgatgggcaccaacacatcatacattttggaattgaaaggtctttctccg 32783913  T
Q  111 aaggattccttgtctgtatttgtcaaatgggcatttaaagagggagaagacaaaaaatatccaaaattgatagagattgggaaagaaattgtgcaaaaat 210  Q
     |||||||||||||||||||| |||||||||| ||||||||||||||||| ||||| |||||| |||||||  ||||||||||||||||||| |||||||    
T  32783912 gaggattccttgtctgtatttatcaaatgggcttttaaagagggagaagagaaaaactatccagaattgatgaagattgggaaagaaattgtacaaaaat 32783813  T
Q  211 gtggagggctt 221  Q
    |||||||||||    
T  32783812 gtggagggctt 32783802  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 35157775 - 35157977
Alignment:
Q  19 aaggaagtaaagttttagtgactacacgtagccactcaattgctgaaatgatgtgcacaaatacatcatacactttgcaaggtctctctggaaaggattc 118  Q
    |||||||||||||  |||||||| |||||||| || |  | ||| | |||||| ||||  | || || |||| ||||||||| || |||  | |||| ||    
T  35157775 aaggaagtaaagtactagtgacttcacgtagcgacacggtagctaacatgatgggcacttacacttcttacaatttgcaagggctttctaaagaggactc 35157874  T
Q  119 cttgtctgtatttgtcaaatgggcatttaaagagggagaagacaaaaaatatccaaaattgatagagattgggaaagaaattgtgcaaaaatgtggaggg 218  Q
     |||||||||||||| |||||||| ||||||||||||||||| |  ||| ||||  || | || |||||||| ||||| |||||||  ||||||||||||    
T  35157875 attgtctgtatttgtaaaatgggcttttaaagagggagaagagagtaaacatcctgaactaatggagattggaaaagatattgtgcttaaatgtggaggg 35157974  T
Q  219 ctt 221  Q
    |||    
T  35157975 ctt 35157977  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 211
Target Start/End: Complemental strand, 18125510 - 18125391
Alignment:
Q  92 tttgcaaggtctctctggaaaggattccttgtctgtatttgtcaaatgggcatttaaagagggagaagacaaaaaatatccaaaattgatagagattggg 191  Q
    |||||||||||| |||   |||||||  || ||| ||||||||||||||||||| || || || |||||  |||||||||||||  |  ||||||| ||     
T  18125510 tttgcaaggtctttctttgaaggattgtttatctctatttgtcaaatgggcattcaaggaaggcgaagaagaaaaatatccaaatctagtagagatagga 18125411  T
Q  192 aaagaaattgtgcaaaaatg 211  Q
    ||||| |||||| |||||||    
T  18125410 aaagagattgtgaaaaaatg 18125391  T

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