View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18371_high_11 (Length: 392)
Name: NF18371_high_11
Description: NF18371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18371_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 19 - 375
Target Start/End: Complemental strand, 41338197 - 41337841
Alignment:
| Q |
19 |
tggaaacttgtttgaggtgtcttctaagtatgtgccacccattcgccctattggtagaggcgcttatggtatcgtttggtaagtgttcttgtttctttct |
118 |
Q |
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| T |
41338197 |
tggaaacttgtttgaggtgtcttctaagtatgtgccacccattcgccctattggtagaggcgcttatggtatcgtttggtaagtgttcttgtttctttct |
41338098 |
T |
|
| Q |
119 |
ttcattaacttctggtcttggcttttggttcagctaattcataggaccaaatgaatgcatgaatttgacgttttgtttattgtaaatgtttttactgtca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41338097 |
ttcattaacttctggtcttggcttttggttcagctaattcataggaccaaatgaatgcatgaatttgacgttttgtttattgtaaatgtttttactgtca |
41337998 |
T |
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| Q |
219 |
cttgaacaatggttttctttttagtgctgctgttaattctgatacacatgaacaagttgccatcaagaagattggtaatgcatttgacaatataattgat |
318 |
Q |
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| T |
41337997 |
cttgaacaatggttttctttttagtgctgctgttaattctgatacacatgaacaagttgccatcaagaagattggtaatgcatttgacaatataattgat |
41337898 |
T |
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| Q |
319 |
gctaaaaggactttgagagaaatcaagctccttcgtcacatggatcacccaaatgta |
375 |
Q |
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| T |
41337897 |
gctaaaaggactttgagagaaatcaagctccttcgtcacatggatcacccaaatgta |
41337841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 241 - 329
Target Start/End: Original strand, 11057580 - 11057668
Alignment:
| Q |
241 |
agtgctgctgttaattctgatacacatgaacaagttgccatcaagaagattggtaatgcatttgacaatataattgatgctaaaaggac |
329 |
Q |
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| T |
11057580 |
agtgctgctgtaaatgctgagacacgcgaggaagtcgccattaagaagattggcaatgcatttgacaacagaatagatgctaaaaggac |
11057668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 236 - 362
Target Start/End: Original strand, 2607369 - 2607495
Alignment:
| Q |
236 |
tttttagtgctgctgttaattctgatacacatgaacaagttgccatcaagaagattggtaatgcatttgacaatataattgatgctaaaaggactttgag |
335 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||| || ||||||||||||||||||||||| |
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| T |
2607369 |
ttttcagtgctgctgttaattctgatacacatgaggaagttgccatcaagaagattgccaatacatttgacaacattattgatgctaaaaggactttgag |
2607468 |
T |
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| Q |
336 |
agaaatcaagctccttcgtcacatgga |
362 |
Q |
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| T |
2607469 |
ggaaattaagcttcttcgtcacatgga |
2607495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 2607046 - 2607125
Alignment:
| Q |
19 |
tggaaacttgtttgaggtgtcttctaagtatgtgccacccattcgccctattggtagaggcgcttatggtatcgtttggt |
98 |
Q |
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| T |
2607046 |
tggaaacttgtttgaagtgtcctccaaatatgttcctcctcttcgccctatcggtagaggtgcttatggaatcgtctggt |
2607125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 241 - 365
Target Start/End: Complemental strand, 29767922 - 29767798
Alignment:
| Q |
241 |
agtgctgctgttaattctgatacacatgaacaagttgccatcaagaagattggtaatgcatttgacaatataattgatgctaaaaggactttgagagaaa |
340 |
Q |
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| T |
29767922 |
agtgctgctgtaaatgcggagacacgggaagaagttgccattaagaaggttggcaatgcatttgacaacagaattgatgctaaaaggaccttacgagaaa |
29767823 |
T |
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| Q |
341 |
tcaagctccttcgtcacatggatca |
365 |
Q |
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| || || | || ||||||||||| |
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| T |
29767822 |
ttaaacttcagcggcacatggatca |
29767798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 252 - 365
Target Start/End: Original strand, 34415880 - 34415993
Alignment:
| Q |
252 |
taattctgatacacatgaacaagttgccatcaagaagattggtaatgcatttgacaatataattgatgctaaaaggactttgagagaaatcaagctcctt |
351 |
Q |
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|||||| || ||| ||||||| ||||| | |||||||||| |||||||||||||| | ||||||||||| |||||| | | ||||||||||| ||| |
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| T |
34415880 |
taattcggagacaaatgaacatgttgcggttaagaagattgcaaatgcatttgacaacaagattgatgctaagaggactctccgtgaaatcaagctgctt |
34415979 |
T |
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| Q |
352 |
cgtcacatggatca |
365 |
Q |
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|| || |||||||| |
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| T |
34415980 |
cgccatatggatca |
34415993 |
T |
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