View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18371_high_17 (Length: 326)
Name: NF18371_high_17
Description: NF18371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18371_high_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 10 - 310
Target Start/End: Complemental strand, 14275651 - 14275351
Alignment:
| Q |
10 |
aaaagaagatattacatgcgtgaatgaaattcagtcaatagtttaaccttctcatatctaataactttatgtttatatttgttgctgcagagtcttgagc |
109 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14275651 |
aaaagaagatattacatgcgtgaatgaaactcagttaatagtttaaccttctcatatctaataactttatgtttatatttgttgctgcagagtcttgagc |
14275552 |
T |
|
| Q |
110 |
ggtgccaattgaaagaagctgtggctgcaaagcctgagaaacttgacgctttaggtgatcaaataaaatctactcataaatttcatgttttagaagtttt |
209 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
14275551 |
ggtgtcaattgaaagaagctgtggctgcaaagcctgagaaacttgacgctttaggtgatcaaataaaatctacttataaatttcatgttttagaagtttt |
14275452 |
T |
|
| Q |
210 |
gttataaacaaatgttagtgattaatttgtcagcagtagagatcaatcgaatgttgaacctcttacataatatttatccagcgtcccaacacacatcatt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14275451 |
gttataaacaaatgttagtgattaatttgtcagcagtagagatcgatcgaatgttgaacctcttacataatatttatccagcgtcccaacacacatcatt |
14275352 |
T |
|
| Q |
310 |
g |
310 |
Q |
| |
|
| |
|
|
| T |
14275351 |
g |
14275351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 10 - 245
Target Start/End: Complemental strand, 14297518 - 14297283
Alignment:
| Q |
10 |
aaaagaagatattacatgcgtgaatgaaattcagtcaatagtttaaccttctcatatctaataactttatgtttatatttgttgctgcagagtcttgagc |
109 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
14297518 |
aaaagaagatattacatgtgtgaatgaaattcagttaatagttttaccttctcatatctaataactttatgtttatgtttgtttctgcagagtcttgagc |
14297419 |
T |
|
| Q |
110 |
ggtgccaattgaaagaagctgtggctgcaaagcctgagaaacttgacgctttaggtgatcaaataaaatctactcataaatttcatgttttagaagtttt |
209 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
14297418 |
ggtgccaattgaaagatgctgtggctgcaaagcctgagaaacttgacgctttaggtgatcaaataaaatcaactcataaatctcatgttttagaagtttt |
14297319 |
T |
|
| Q |
210 |
gttataaacaaatgttagtgattaatttgtcagcag |
245 |
Q |
| |
|
||||| | ||||||| |||||||||||||| |||| |
|
|
| T |
14297318 |
tttatagataaatgttggtgattaatttgtcggcag |
14297283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 78 - 242
Target Start/End: Complemental strand, 14313517 - 14313354
Alignment:
| Q |
78 |
atgtttatatttgttgctgcagagtcttgagcggtgccaattgaaagaagctgtggctgcaaagcctgagaaacttgacgctttaggtgatcaaataaaa |
177 |
Q |
| |
|
||||| || |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14313517 |
atgttcatctttgtttctgcagagtcttgagcggtgccaattgaaagaagtggtggctgcaaagcctgagaaactcgacgctttaggtgatcaaataaac |
14313418 |
T |
|
| Q |
178 |
tctactcataaatttcatgttttagaagttttgttataaacaaatgttagtgattaatttgtcag |
242 |
Q |
| |
|
||| ||||||||| |||| || | ||||| ||||| |||||||||||| |||||||||||| |
|
|
| T |
14313417 |
tcttctcataaatatcatattctcattgtttt-ttataggcaaatgttagtggttaatttgtcag |
14313354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 87 - 190
Target Start/End: Complemental strand, 25880491 - 25880388
Alignment:
| Q |
87 |
tttgttgctgcagagtcttgagcggtgccaattgaaagaagctgtggctgcaaagcctgagaaacttgacgctttaggtgatcaaataaaatctactcat |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||| ||| |||| |
|
|
| T |
25880491 |
tttgttgctgcagagtcttgagcggtgccaattgaaagaagtggtggctgcaaagcctgagaaacttgaggcttcaggtgatcaaataaactcttgtcat |
25880392 |
T |
|
| Q |
187 |
aaat |
190 |
Q |
| |
|
|||| |
|
|
| T |
25880391 |
aaat |
25880388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 239
Target Start/End: Original strand, 28943079 - 28943107
Alignment:
| Q |
211 |
ttataaacaaatgttagtgattaatttgt |
239 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
28943079 |
ttataaacaaatgttagtgattaatttgt |
28943107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University