View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18371_high_19 (Length: 318)

Name: NF18371_high_19
Description: NF18371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18371_high_19
NF18371_high_19
[»] chr4 (3 HSPs)
chr4 (1-318)||(53110144-53110461)
chr4 (11-229)||(53115560-53115780)
chr4 (84-227)||(53119637-53119782)


Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 53110144 - 53110461
Alignment:
Q  1 aagaacacactattcttacaaatagaatgctttcacagcttaagccataatggatggtaagacgaaaggtccacgctgttgattaataattaagattttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  53110144 aagaacacactattcttacaaatagaatgctttcacagcttaagccataatggatggtaagacaaaaggtccacgctgttgattaataattaaaattttc 53110243  T
Q  101 tttgttcaatattgaatagaaatcaacgtgcaaattttagcgaacagaaattgaaaagggaaaatcctaatataatatcaagcaggttatggcctagttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53110244 tttgttcaatattgaatagaaatcaacgtgcaaattttagcgaacagaaattgaaaagggaaaatcctaatataatatcaagcaggttatggcctagttt 53110343  T
Q  201 aaactcaaacatcaaattttacttaaataggaaaatttgaataacaataacttcatttttgcagcacaattaggaaaatgaatgccaatcatactacata 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53110344 aaactcaaacatcaaattttacttaaataggaaaatttgaataacaataacttcatttttgcagcacaattaggaaaatgaatgccaatcatactacata 53110443  T
Q  301 atactgagagaaaatgcc 318  Q
    ||| ||||||||||||||    
T  53110444 atagtgagagaaaatgcc 53110461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 11 - 229
Target Start/End: Original strand, 53115560 - 53115780
Alignment:
Q  11 tattcttacaaatagaatgctttcacagcttaagccataatggatggtaagacgaaaggtccacgctgttgattaataattaagattttctttgttcaat 110  Q
    |||||||| ||| |||| |||||| ||||||||| ||||||||||||| || | |||| | || ||| |||||||||||||||| |||| ||||||||||    
T  53115560 tattcttataaagagaaagctttcgcagcttaagtcataatggatggtgaggcaaaagattcatgcttttgattaataattaaggttttttttgttcaat 53115659  T
Q  111 attgaatagaaatcaacgtgcaaattttagcgaacag-aaattgaaaagggaaaatcctaatataatatcaagcaggt-tatggcctagtttaaactcaa 208  Q
     ||||||||||||||| ||||||| |||||| ||||| |||||| |||||||||||||||||||| |||| | |||||  |||||||||| ||| || ||    
T  53115660 tttgaatagaaatcaatgtgcaaactttagcaaacagaaaattggaaagggaaaatcctaatatattatctaacaggtgcatggcctagtgtaagcttaa 53115759  T
Q  209 acatcaaattttacttaaata 229  Q
    ||||||||||| |||||||||    
T  53115760 acatcaaatttcacttaaata 53115780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 84 - 227
Target Start/End: Original strand, 53119637 - 53119782
Alignment:
Q  84 taataattaagattttctttgttcaatattgaatagaaatcaacgtgcaaattttagcgaacagaaa-ttgaaaagggaaaatcctaatataatatcaag 182  Q
    |||| |||||| ||||||||||||| | ||||||||||||||| |||||||  ||||| |||||||| ||||||||||||||||||||||||||||||||    
T  53119637 taatgattaaggttttctttgttcagttttgaatagaaatcaatgtgcaaacattagcaaacagaaaattgaaaagggaaaatcctaatataatatcaag 53119736  T
Q  183 caggt-tatggcctagtttaaactcaaacatcaaattttacttaaa 227  Q
    |||||  ||||| |||||||| |||||||||||||||| |||||||    
T  53119737 caggtgcatggcatagtttaagctcaaacatcaaatttcacttaaa 53119782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University