View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18371_high_20 (Length: 316)
Name: NF18371_high_20
Description: NF18371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18371_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 8 - 263
Target Start/End: Complemental strand, 624485 - 624230
Alignment:
| Q |
8 |
aagcaaaggaggaagatgaagaagaagaatttgtgaggcaacatgagactattactaagcctatgagtcccatgaggaggtcatcagtcagtagtaacaa |
107 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
624485 |
aagcaatggaggaagatgaagaagaagaatttgtgaggcaacatgagactattactaagcctatgagtcccatgaggaggtcatcagtcagtagtaacaa |
624386 |
T |
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| Q |
108 |
taataatggttgggataacaagtgtctaagtgtnnnnnnngctaaagaaaatgatttgagaaaacatgaagctgcaatgaagagggagagagctcttgca |
207 |
Q |
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|||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
624385 |
taataatggttgggataacaagtgtcaaagtgtaaaaaaagctaaagaaaatgatttgagaaaacatgaagctgcaatgaagagggagagagctcttgca |
624286 |
T |
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| Q |
208 |
tatgctttcaattatcagcaggtaaagttactcaactctctatatcctagttctat |
263 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
624285 |
tatgctttcaattatcaacaggtaaagttactcaactctctatatcctagttctat |
624230 |
T |
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