View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18371_high_35 (Length: 231)
Name: NF18371_high_35
Description: NF18371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18371_high_35 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 8885366 - 8885571
Alignment:
| Q |
17 |
aatattgtggttttatgttaacattaagttgaatattataaaatcaaaattgttctatatatgaacaacgt--tgcatatcaaagcaaattctttatcac |
114 |
Q |
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| T |
8885366 |
aatattgtggttttatgttaacattaagttgaatattataaaatcaaaattgttctatatatgaacaacatattgcatatcaaagcaaattctttatcac |
8885465 |
T |
|
| Q |
115 |
tccaa-ccacaatgtttctatctcaaaccacaaaatcactatatcactccacaaaaatctatattaaaacgaatataattttaaggttcttcggcatctt |
213 |
Q |
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| T |
8885466 |
tccaaaccacaatgtttctatctcaaaccacaaaatcactttatcactccacaaaaatttatattaaaaccaatataattttagggttcttcggcatctt |
8885565 |
T |
|
| Q |
214 |
cttctc |
219 |
Q |
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|||||| |
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| T |
8885566 |
cttctc |
8885571 |
T |
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