View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18371_high_9 (Length: 522)
Name: NF18371_high_9
Description: NF18371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18371_high_9 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 441; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Original strand, 8577032 - 8577551
Alignment:
| Q |
1 |
aaattaacccgaccctcaaattttttgatatatattttctcttcactnnnnnnncattttattggattgactgaattatcaggatcaagaaattgatata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8577032 |
aaattaacccgaccctcaaattttttgatatatattttctcttcgctaaaaaaacattttattggattgactgaattatcaggatcaagaaattgatata |
8577131 |
T |
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| Q |
101 |
aataattaaattattccctnnnnnnnnnnnntatattgtaagattacaagaataaaaaagtaaattaagtttaaaatctcatccttcattttgtggacta |
200 |
Q |
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| T |
8577132 |
aataattaaattattccctaaaaaaaaaaa--atattgtaagattacaagaataaaaaagtaaattaagtttaaaatctcatccttcattttgtggacta |
8577229 |
T |
|
| Q |
201 |
aacaatatttttaattaaaaaatttatcctctcttcctttcccctcccttttcgatcccttgttaatttctcagccctgtttgtactttaccaaaaaacc |
300 |
Q |
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| T |
8577230 |
aacaatatttttaattaaaaaatttatcctctcttcctttcccctcccttttcgatcccttgttaatttctcagccctgtttgtactttaccaaaaaacc |
8577329 |
T |
|
| Q |
301 |
ctaagcaaaataagaaaataatggtatgcagaaacgtgaaaagtgtaagagagagaggtttgaggaaacacaaaaatgtgatggttagagagactgagag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8577330 |
ctaagcaaaataagaaaataatggtatgcagaaacgtgaagagtgtaagagagagaggtttgaggaaacacaaaaatgtgatggttagagagactgagag |
8577429 |
T |
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| Q |
401 |
aattattcaccaaacaaaaaggatgttgagaggattgaaggagatgcacatgttaatgttaatggtgaggttatgaaaggaatgatattatatggattga |
500 |
Q |
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| T |
8577430 |
aattattcaccaaacaaaaagtatgttgagaggattgaaggagatgcacatgttaatgttaatggtgaggttatgaaaggaatcatattatatggattga |
8577529 |
T |
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| Q |
501 |
agaaaatgatggtagctggaat |
522 |
Q |
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| T |
8577530 |
agaaaatgatggtagctggaat |
8577551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 8597901 - 8597490
Alignment:
| Q |
1 |
aaattaacccgaccctcaaattttttgatatatattttctcttcactnnnnnnncattttattggattgactgaattatcaggatcaagaaattgatata |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||| |||||| ||||||| |
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| T |
8597901 |
aaattaacccgaccctcaaattttttgatatatattttctcttccctaaaaaaacattttattgggttgactgaattatcaggatgaagaaactgatata |
8597802 |
T |
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| Q |
101 |
aataattaaattattccctnnnnnnnnnnnntatattgtaagattacaagaataaaaaa-gtaaattaagtttaaaatctcatccttcattttgtggact |
199 |
Q |
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| T |
8597801 |
aataattaaattattccctaaaaaaaattaaattattgtaagattacaagaataaaaaaagtaaattaagtttaaaatctcatccttccctttctggact |
8597702 |
T |
|
| Q |
200 |
aaacaatatttttaattaaaaaa-tttatcc-tctcttc----ctttcccctcccttttcgatcccttgttaatttctcagccctgtttgtactttacca |
293 |
Q |
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||| ||||||| |||||||||| |||||| |||| || ||||||||||||||||||||||||| |||| ||||||||||||||||||| | | |
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| T |
8597701 |
aaa-aatattt--aattaaaaaaatttatcaatctcatctcttctttcccctcccttttcgatccctttttaaattctcagccctgtttgtac----caa |
8597609 |
T |
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| Q |
294 |
aaaaaccctaagcaaaataagaaaataatggtatgcagaaacgtgaaaagtgtaagagagagaggtttgaggaaacacaaaaatgtgatggttagagaga |
393 |
Q |
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| T |
8597608 |
aaaaaccctaagcaaaataagaaaataatggtatgcagaaacgtgaaaagtgtaagagagagaggtttgaggaaacacaaaaatgtgatggtta--gaga |
8597511 |
T |
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| Q |
394 |
ctgagagaattattcaccaaa |
414 |
Q |
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||||||||||||||||||||| |
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| T |
8597510 |
ctgagagaattattcaccaaa |
8597490 |
T |
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