View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18371_low_1 (Length: 877)

Name: NF18371_low_1
Description: NF18371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18371_low_1
NF18371_low_1
[»] chr7 (12 HSPs)
chr7 (115-861)||(41760142-41760880)
chr7 (1-117)||(41759970-41760086)
chr7 (378-468)||(37928265-37928355)
chr7 (375-466)||(23142707-23142799)
chr7 (381-435)||(11736227-11736281)
chr7 (378-412)||(18221174-18221208)
chr7 (375-435)||(16685729-16685790)
chr7 (375-435)||(17659965-17660026)
chr7 (375-435)||(3624279-3624339)
chr7 (381-412)||(1703935-1703966)
chr7 (381-436)||(7833805-7833860)
chr7 (375-466)||(45907089-45907179)
[»] chr5 (2 HSPs)
chr5 (375-464)||(7319227-7319316)
chr5 (375-413)||(14044735-14044773)
[»] chr4 (4 HSPs)
chr4 (375-463)||(20775042-20775130)
chr4 (375-419)||(31152188-31152232)
chr4 (375-436)||(27284069-27284130)
chr4 (375-436)||(52837322-52837383)
[»] chr8 (1 HSPs)
chr8 (334-437)||(3137396-3137499)
[»] chr3 (5 HSPs)
chr3 (375-464)||(24344800-24344889)
chr3 (375-465)||(36436552-36436642)
chr3 (378-467)||(48338779-48338868)
chr3 (378-468)||(49543170-49543260)
chr3 (381-436)||(635766-635821)
[»] chr6 (2 HSPs)
chr6 (375-438)||(10008188-10008251)
chr6 (381-435)||(19418593-19418647)
[»] chr2 (4 HSPs)
chr2 (375-462)||(4978807-4978894)
chr2 (375-462)||(4996715-4996802)
chr2 (381-412)||(36622124-36622155)
chr2 (378-435)||(13738453-13738510)
[»] chr1 (2 HSPs)
chr1 (375-431)||(46295926-46295982)
chr1 (378-435)||(13969157-13969214)


Alignment Details
Target: chr7 (Bit Score: 626; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 626; E-Value: 0
Query Start/End: Original strand, 115 - 861
Target Start/End: Original strand, 41760142 - 41760880
Alignment:
Q  115 ggcacgtcttgtgatttataaggaagttagttattattgtttgttttttcctcttaaaaaaccggactaaaatgaatattacaataaatattttccaagt 214  Q
    |||||||||||||||| ||||||||||||||| ||        ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41760142 ggcacgtcttgtgattcataaggaagttagttttt--------ttttttcctcttaaaaaactggactaaaatgaatattacaataaatattttccaagt 41760233  T
Q  215 aactttctacacagattaaaagcataaaaatggtatatttgcatataccatagtgtagaaactattaaacatagggttttattaacatgtgtctctggga 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || |||     
T  41760234 aactttctacacagattaaaagcataaaaatggtatatttgcatataccatagtgtagaaactattaaacatagggttttgttaacctgtgtttcagggg 41760333  T
Q  315 cactagttaaagaaactaaaaatagaaattatgtcttgaaaatgtaagnnnnnnnnnnnnatcaagtaattattacacaactttttaataaaatcttatt 414  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||            ||||||||||||||||||||||||||||||||||||||||    
T  41760334 cactggttaaagaaactaaaaatagaaattatgtcttaaaaatgtaagtttttattttttatcaagtaattattacacaactttttaataaaatcttatt 41760433  T
Q  415 ctttttggatgcttaaccaatgtccatgaaacactatttaacattctccttatacatattgtaaaaaagagaaaccaataaaggaaatgaaaaatattgc 514  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||    
T  41760434 ctttttggatgcttaaccaatgtccatgaaacactatttaacattctcctaaaacatattgtaaaaaagagaaaccaatgaaggaaatgaaaaatattgc 41760533  T
Q  515 atgcgatgcaaatactcggaaatgattatgggaagagtttgaatactattggcaataagatcacaccaatttattaccatgattcttccttcctatgaat 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41760534 atgcgatgcaaatactcggaaatgattatgggaagagtttgaatactattggcaataagatcacaccaatttattaccatgattcttccttcctatgaat 41760633  T
Q  615 attatatatcccacctaaaacatttctgctttatgtttaaccctactcctctgtctcaactcttctcacatcttttctttttcactaacaaaatcatcat 714  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41760634 attatatatcccacccaaaacatttctgctttatgtttaaccctactcctctgtctcaactcttctcacatcttttctttttcactaacaaaatcatcat 41760733  T
Q  715 gatttctcctaccatataactctacgtactatatgcagcattaataagaatacaatggcttttgaatcatcttcatcaataaaactcttgtttattatgg 814  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41760734 gatttctcctaccatataactctacgtactatatgcagcattaataagaatacaatggcttttgaatcatcttcatcaataaaactcttgtttattatgg 41760833  T
Q  815 ttccactcatagtgattgcagtgcttgtttctgtatcgggtcctaac 861  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  41760834 ttccactcatagtgattgcagtgcttgtttctgtatcgggtcctaac 41760880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 41759970 - 41760086
Alignment:
Q  1 aactccaattgcatggtggttgaagaatcatagactgattgatttccgttgtagatgttcattcttggtaagatagtccattactttgtttaggattgtc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||    
T  41759970 aactccaattgcatggtggttgaagaatcatagactgattgatttccgttgtagatgttcattcttggtaaactagcccattactttgtttaggattgtc 41760069  T
Q  101 gactttgtaatcttggc 117  Q
    |||||||||||||||||    
T  41760070 gactttgtaatcttggc 41760086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 378 - 468
Target Start/End: Complemental strand, 37928355 - 37928265
Alignment:
Q  378 aagtaattattacacaactttttaataaaatcttattctttttggatgcttaaccaatgtccatgaaacactatttaacattctccttata 468  Q
    ||||||||||||||||||||||| |||||| |||| |  ||||||||| ||||||||||||| ||| |||||| ||| |||| ||| ||||    
T  37928355 aagtaattattacacaacttttttataaaaacttacttattttggatgtttaaccaatgtccttgagacactagttagcattttccatata 37928265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 375 - 466
Target Start/End: Original strand, 23142707 - 23142799
Alignment:
Q  375 atcaagtaattattacacaac-tttttaataaaatcttattctttttggatgcttaaccaatgtccatgaaacactatttaacattctcctta 466  Q
    ||||||||||||||||||||| ||||| |||||| |||| |  ||||||||| ||||||||||  | ||| |||||  |||||||||||||||    
T  23142707 atcaagtaattattacacaacttttttcataaaaacttacttattttggatgtttaaccaatgctcttgagacactcgttaacattctcctta 23142799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 381 - 435
Target Start/End: Original strand, 11736227 - 11736281
Alignment:
Q  381 taattattacacaactttttaataaaatcttattctttttggatgcttaaccaat 435  Q
    |||||||||||| ||||||||||||||||||| |  |||||| ||||||||||||    
T  11736227 taattattacaccactttttaataaaatcttacttcttttggctgcttaaccaat 11736281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 378 - 412
Target Start/End: Original strand, 18221174 - 18221208
Alignment:
Q  378 aagtaattattacacaactttttaataaaatctta 412  Q
    |||||||||||||||||||||||||||||||||||    
T  18221174 aagtaattattacacaactttttaataaaatctta 18221208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 375 - 435
Target Start/End: Complemental strand, 16685790 - 16685729
Alignment:
Q  375 atcaagtaattattacacaacttttt-aataaaatcttattctttttggatgcttaaccaat 435  Q
    |||||||||| ||||||||||||||| ||||||| |||| |  |||||||||||||||||||    
T  16685790 atcaagtaatgattacacaactttttaaataaaaacttacttattttggatgcttaaccaat 16685729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 375 - 435
Target Start/End: Complemental strand, 17660026 - 17659965
Alignment:
Q  375 atcaagtaattattacacaacttttt-aataaaatcttattctttttggatgcttaaccaat 435  Q
    |||||||||| ||||||||||||||| ||||||| |||| |  |||||||||||||||||||    
T  17660026 atcaagtaatgattacacaactttttaaataaaaacttacttattttggatgcttaaccaat 17659965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 375 - 435
Target Start/End: Original strand, 3624279 - 3624339
Alignment:
Q  375 atcaagtaattattacacaactttttaataaaatcttattctttttggatgcttaaccaat 435  Q
    ||||| |||||||||||| ||||||||||||||||||| |   |||| |||||||||||||    
T  3624279 atcaaataattattacaccactttttaataaaatcttacttcctttgaatgcttaaccaat 3624339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 412
Target Start/End: Original strand, 1703935 - 1703966
Alignment:
Q  381 taattattacacaactttttaataaaatctta 412  Q
    ||||||||||||||||||||||||||||||||    
T  1703935 taattattacacaactttttaataaaatctta 1703966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 7833805 - 7833860
Alignment:
Q  381 taattattacacaactttttaataaaatcttattctttttggatgcttaaccaatg 436  Q
    |||||||| ||| ||||||||||||||||||| |  |||||| |||||||||||||    
T  7833805 taattattgcactactttttaataaaatcttacttgttttggctgcttaaccaatg 7833860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 375 - 466
Target Start/End: Original strand, 45907089 - 45907179
Alignment:
Q  375 atcaagtaattattacacaactttttaataaaatctta-ttctttttggatgcttaaccaatgtccatgaaacactatttaacattctcctta 466  Q
    |||||||||| ||||||  |||||||||||||| |||| ||||||||  ||||||||||||| |||  |  |||||  |||||||||||||||    
T  45907089 atcaagtaataattacattactttttaataaaaacttacttcttttt--atgcttaaccaatatcccggggacactggttaacattctcctta 45907179  T

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Target: chr5 (Bit Score: 62; Significance: 3e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 375 - 464
Target Start/End: Complemental strand, 7319316 - 7319227
Alignment:
Q  375 atcaagtaattattacacaactttttaataaaatcttattctttttggatgcttaaccaatgtccatgaaacactatttaacattctcct 464  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||   |||| ||||||||||||||    
T  7319316 atcaagtaattattacacaactttttaatagaatcttactctttttggatgcttaaccaatgcccatggggcactgtttaacattctcct 7319227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 375 - 413
Target Start/End: Original strand, 14044735 - 14044773
Alignment:
Q  375 atcaagtaattattacacaactttttaataaaatcttat 413  Q
    |||||||||||||||||||||||||| |||||| |||||    
T  14044735 atcaagtaattattacacaacttttttataaaaacttat 14044773  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 375 - 463
Target Start/End: Complemental strand, 20775130 - 20775042
Alignment:
Q  375 atcaagtaattattacacaactttttaataaaatcttattctttttggatgcttaaccaatgtccatgaaacactatttaacattctcc 463  Q
    ||||| ||||||||||| |||||||| |||||| |||| |  ||||||||||||||||||||||  || | ||||||||| ||||||||    
T  20775130 atcaaataattattacataactttttcataaaaacttacttgttttggatgcttaaccaatgtctttggagcactatttagcattctcc 20775042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 375 - 419
Target Start/End: Original strand, 31152188 - 31152232
Alignment:
Q  375 atcaagtaattattacacaactttttaataaaatcttattctttt 419  Q
    ||||| ||||||| |||||| ||||||||||||||||||||||||    
T  31152188 atcaaataattataacacaattttttaataaaatcttattctttt 31152232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 375 - 436
Target Start/End: Complemental strand, 27284130 - 27284069
Alignment:
Q  375 atcaagtaattattacacaactttttaataaaatcttattctttttggatgcttaaccaatg 436  Q
    ||||| |||| ||| ||||||||||| |||||| ||||||  ||||||||| ||||||||||    
T  27284130 atcaaataatgattgcacaacttttttataaaaacttatttattttggatgtttaaccaatg 27284069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 375 - 436
Target Start/End: Original strand, 52837322 - 52837383
Alignment:
Q  375 atcaagtaattattacacaactttttaataaaatcttattctttttggatgcttaaccaatg 436  Q
    |||| ||||||||||||||||||||| ||||||  ||  |  ||||||||||||||||||||    
T  52837322 atcacgtaattattacacaactttttcataaaaattttcttgttttggatgcttaaccaatg 52837383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 334 - 437
Target Start/End: Complemental strand, 3137499 - 3137396
Alignment:
Q  334 aaatagaaattatgtcttgaaaatgtaagnnnnnnnnnnnnatcaagtaattattacacaactttttaataaaatcttattctttttggatgcttaacca 433  Q
    ||||||||||| |||||||||||||||||            |||||||||||||||||||||||||| ||| || ||||||  |||||||||| ||||||    
T  3137499 aaatagaaattttgtcttgaaaatgtaagatgttacttttgatcaagtaattattacacaactttttcatataaacttatttgttttggatgcctaacca 3137400  T
Q  434 atgt 437  Q
    ||||    
T  3137399 atgt 3137396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 375 - 464
Target Start/End: Complemental strand, 24344889 - 24344800
Alignment:
Q  375 atcaagtaattattacacaactttttaataaaatctta-ttctttttggatgcttaaccaatgtccatgaaacactatttaacattctcct 464  Q
    ||||| ||||||||||||||||||||| | |||| ||| ||||||||  |||||||||||||| || ||| ||||| ||||||||||||||    
T  24344889 atcaaataattattacacaactttttagttaaatattacttctttttt-atgcttaaccaatgcccctgagacactgtttaacattctcct 24344800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 375 - 465
Target Start/End: Complemental strand, 36436642 - 36436552
Alignment:
Q  375 atcaagtaattattacacaactttttaataaaatcttattctttttggatgcttaaccaatgtccatgaaacactatttaacattctcctt 465  Q
    ||||| |||||||| ||| |||||||||||||||||||||  |||| |||| |||||| ||| ||||||  |||  |||||||||||||||    
T  36436642 atcaaataattattgcactactttttaataaaatcttatttattttagatgtttaacccatgcccatgaggcacggtttaacattctcctt 36436552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 378 - 467
Target Start/End: Complemental strand, 48338868 - 48338779
Alignment:
Q  378 aagtaattattacacaactttttaataaaatcttattctttttggatgcttaaccaatgtccatgaaacactatttaacattctccttat 467  Q
    ||||||||||||||||||||||| |||||| |||| |  ||||||||||||||||| || || |  | ||||| ||| ||||||||||||    
T  48338868 aagtaattattacacaacttttttataaaaacttacttgttttggatgcttaaccattgcccttagagcactagttagcattctccttat 48338779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 378 - 468
Target Start/End: Complemental strand, 49543260 - 49543170
Alignment:
Q  378 aagtaattattacacaactttttaataaaatcttattctttttggatgcttaaccaatgtccatgaaacactatttaacattctccttata 468  Q
    ||||||||||||||||  ||||| || |||  ||| || ||||| ||||||||||||||||| |   |||||| |||||||||||||||||    
T  49543260 aagtaattattacacacttttttcatgaaaatttactcgttttgaatgcttaaccaatgtccttaggacactaattaacattctccttata 49543170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 635766 - 635821
Alignment:
Q  381 taattattacacaactttttaataaaatcttattctttttggatgcttaaccaatg 436  Q
    |||| |||||||||||||| ||||||| |||||   ||||||||||||||||||||    
T  635766 taatgattacacaacttttcaataaaaacttatatgttttggatgcttaaccaatg 635821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 375 - 438
Target Start/End: Complemental strand, 10008251 - 10008188
Alignment:
Q  375 atcaagtaattattacacaactttttaataaaatcttattctttttggatgcttaaccaatgtc 438  Q
    |||||||||| ||||||| |||||||||||||| |||| |  |||||| |||||||||||||||    
T  10008251 atcaagtaataattacaccactttttaataaaaacttacttcttttggttgcttaaccaatgtc 10008188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 381 - 435
Target Start/End: Complemental strand, 19418647 - 19418593
Alignment:
Q  381 taattattacacaactttttaataaaatcttattctttttggatgcttaaccaat 435  Q
    |||||||||||  ||||||||||||||||||| |  |||||||||||||||||||    
T  19418647 taattattacatcactttttaataaaatcttacttcttttggatgcttaaccaat 19418593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 375 - 462
Target Start/End: Original strand, 4978807 - 4978894
Alignment:
Q  375 atcaagtaattattacacaactttttaataaaatcttattctttttggatgcttaaccaatgtccatgaaacactatttaacattctc 462  Q
    |||||||||| |||||||||| |||| |||||| ||||||  ||||||||| ||||||||||| | || | ||||| ||| |||||||    
T  4978807 atcaagtaatgattacacaacatttttataaaaacttatttattttggatgtttaaccaatgttcttgtagcactagttatcattctc 4978894  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 375 - 462
Target Start/End: Original strand, 4996715 - 4996802
Alignment:
Q  375 atcaagtaattattacacaactttttaataaaatcttattctttttggatgcttaaccaatgtccatgaaacactatttaacattctc 462  Q
    |||||||||| |||||||||| |||| |||||| ||||||  ||||||||| ||||||||||| | || | ||||| ||| |||||||    
T  4996715 atcaagtaatgattacacaacatttttataaaaacttatttattttggatgtttaaccaatgttcttgtagcactagttatcattctc 4996802  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 412
Target Start/End: Complemental strand, 36622155 - 36622124
Alignment:
Q  381 taattattacacaactttttaataaaatctta 412  Q
    ||||||||||||||||||||||||||||||||    
T  36622155 taattattacacaactttttaataaaatctta 36622124  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 378 - 435
Target Start/End: Original strand, 13738453 - 13738510
Alignment:
Q  378 aagtaattattacacaactttttaataaaatcttattctttttggatgcttaaccaat 435  Q
    ||||||| ||||||||| ||||| |||||| |||| |  |||||||||||||||||||    
T  13738453 aagtaatgattacacaatttttttataaaaacttacttgttttggatgcttaaccaat 13738510  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 375 - 431
Target Start/End: Original strand, 46295926 - 46295982
Alignment:
Q  375 atcaagtaattattacacaactttttaataaaatcttattctttttggatgcttaac 431  Q
    |||||||||| || |||||||||||| |||||| ||||||  |||||||||||||||    
T  46295926 atcaagtaatcatgacacaactttttcataaaaacttatttgttttggatgcttaac 46295982  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 378 - 435
Target Start/End: Original strand, 13969157 - 13969214
Alignment:
Q  378 aagtaattattacacaactttttaataaaatcttattctttttggatgcttaaccaat 435  Q
    ||||||||||||||||| ||||| |||||| |||| |  |||||| ||||||||||||    
T  13969157 aagtaattattacacaattttttcataaaaacttacttgttttggttgcttaaccaat 13969214  T

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