View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18371_low_10 (Length: 413)

Name: NF18371_low_10
Description: NF18371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18371_low_10
NF18371_low_10
[»] chr3 (1 HSPs)
chr3 (1-398)||(32598101-32598498)
[»] chr5 (2 HSPs)
chr5 (253-326)||(20626816-20626888)
chr5 (259-343)||(14433505-14433589)
[»] chr4 (5 HSPs)
chr4 (283-355)||(42624941-42625013)
chr4 (253-364)||(24959855-24959966)
chr4 (255-299)||(21090454-21090498)
chr4 (254-305)||(41703238-41703289)
chr4 (261-302)||(40745306-40745347)
[»] chr2 (1 HSPs)
chr2 (293-357)||(24578108-24578172)
[»] chr8 (1 HSPs)
chr8 (285-364)||(29149372-29149452)
[»] chr1 (1 HSPs)
chr1 (253-357)||(17409987-17410092)
[»] scaffold0045 (1 HSPs)
scaffold0045 (253-311)||(25540-25598)
[»] chr7 (2 HSPs)
chr7 (292-398)||(39104066-39104168)
chr7 (283-364)||(43200432-43200513)


Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 32598101 - 32598498
Alignment:
Q  1 atattaaagtaaaatcatgagacaaaacaaggtaatagaaagaagatgtaacccacatcaattattaatggaccgaatgcaagatatataagagatgtaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  32598101 atattaaagtaaaatcatgagacaaaacaaggtaatagaaagaagatgtaacccacatcaattattaatggaccgaatacaagatatataagagatgtaa 32598200  T
Q  101 ctcatatttcaaatgttttaaggtattgggtgaaagggtactatctcaatctcttggtggttttgaatcataagttcattgttgttccttattctctcca 200  Q
    ||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |    
T  32598201 ctcatatttcaaatgttttaaggtattgggtggtagggtactgtctcaatctcttggtggttttgaatcataagttcattgttgtttcttattctctcaa 32598300  T
Q  201 tgactttctaataagaatcctatgatgacacgaaagctgagatttaggaactgtccaataaattttatttgtagaagaggtctaaaacaaattttaatat 300  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32598301 tgacttcctaataagaatcctataatgacacgaaagctgagatttaggaactgtccaataaattttatttgtagaagaggtctaaaacaaattttaatat 32598400  T
Q  301 atgagacatttttagtctatatatgaagcctttttgtttataatatctaaggaaaaatatttttgttttgttgggaagcttaatgcgagggctttagt 398  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32598401 atgaggcatttttagtctatatatgaagcctttttgtttataatatctaaggaaaaatgtttttgttttgttgggaagcttaatgcgagggctttagt 32598498  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 253 - 326
Target Start/End: Original strand, 20626816 - 20626888
Alignment:
Q  253 gtccaataaattttatttgtagaagaggtctaaaacaaattttaatatatgagacatttttagtctatatatga 326  Q
    ||||||||||||||||||||||| ||| | ||||||||||||||| ||||||| | |||||||||| |||||||    
T  20626816 gtccaataaattttatttgtagacgagctttaaaacaaattttaa-atatgaggcttttttagtctgtatatga 20626888  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 259 - 343
Target Start/End: Original strand, 14433505 - 14433589
Alignment:
Q  259 taaattttatttgtagaagaggtctaaaacaaattttaatatatgagacatttttagtctatatatgaagcctttttgtttataa 343  Q
    ||||||||||||||||  |||  |||||||| ||||||||||| |||||||||||||||| |||| ||  || ||||||||||||    
T  14433505 taaattttatttgtaggtgagacctaaaacatattttaatatacgagacatttttagtctgtatacgagaccattttgtttataa 14433589  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 283 - 355
Target Start/End: Complemental strand, 42625013 - 42624941
Alignment:
Q  283 taaaacaaattttaatatatgagacatttttagtctatatatgaagcctttttgtttataatatctaaggaaa 355  Q
    |||| |||| ||||||||||||||||||||||||||  |||||| | |||||||||||||| |||||| ||||    
T  42625013 taaagcaaaatttaatatatgagacatttttagtctgcatatgatggctttttgtttataaaatctaatgaaa 42624941  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 364
Target Start/End: Original strand, 24959855 - 24959966
Alignment:
Q  253 gtccaataaattttatttgtagaagaggtctaaaacaaattttaatatatgagacatttttagtctatatatgaagcctttttgtttataatatctaagg 352  Q
    ||||||||| |||||||| |||  ||| ||||||||||||||||||||| |   | ||||||||  ||||||||   |||||| ||||||| |||||| |    
T  24959855 gtccaataacttttatttttaggtgagttctaaaacaaattttaatatacggagcctttttagttgatatatgagatctttttatttataaaatctaatg 24959954  T
Q  353 aaaaatattttt 364  Q
    ||||||||||||    
T  24959955 aaaaatattttt 24959966  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 299
Target Start/End: Complemental strand, 21090498 - 21090454
Alignment:
Q  255 ccaataaattttatttgtagaagaggtctaaaacaaattttaata 299  Q
    ||||||| ||||||||||||| |||||||||| ||||||||||||    
T  21090498 ccaataatttttatttgtagatgaggtctaaatcaaattttaata 21090454  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 305
Target Start/End: Complemental strand, 41703289 - 41703238
Alignment:
Q  254 tccaataaattttatttgtagaagaggtctaaaacaaattttaatatatgag 305  Q
    |||||||| ||||||||||||  || | ||||||||||||||||||||||||    
T  41703289 tccaataagttttatttgtaggtgatgcctaaaacaaattttaatatatgag 41703238  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 302
Target Start/End: Complemental strand, 40745347 - 40745306
Alignment:
Q  261 aattttatttgtagaagaggtctaaaacaaattttaatatat 302  Q
    ||||||||||||||  |||||||||||||| |||||||||||    
T  40745347 aattttatttgtaggtgaggtctaaaacaagttttaatatat 40745306  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 293 - 357
Target Start/End: Complemental strand, 24578172 - 24578108
Alignment:
Q  293 tttaatatatgagacatttttagtctatatatgaagcctttttgtttataatatctaaggaaaaa 357  Q
    ||||||||||||| |||||||||| | ||||||||| |||||||||||||| |||||| ||||||    
T  24578172 tttaatatatgaggcatttttagtttgtatatgaagtctttttgtttataaaatctaatgaaaaa 24578108  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 364
Target Start/End: Original strand, 29149372 - 29149452
Alignment:
Q  285 aaacaaattttaatatatgagacatttttagtctatatatgaagcctttttgtttat-aatatctaaggaaaaatattttt 364  Q
    ||||||||||||||| ||||||| |||||| | | ||||||| |||||||| ||||| || |||||| |||||||||||||    
T  29149372 aaacaaattttaataaatgagacctttttaatttgtatatgaggcctttttatttataaaaatctaatgaaaaatattttt 29149452  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 357
Target Start/End: Complemental strand, 17410092 - 17409987
Alignment:
Q  253 gtccaataaattttatttgtagaagaggtctaaaacaaattttaatatatgagacatttttagtctatatatga-agcctttttgtttataatatctaag 351  Q
    ||||||||| |||||||| |||  ||| |||| |||||||||||||||||| ||  ||||| ||| | ||||||  | |||||||||||||| ||||||     
T  17410092 gtccaataatttttatttttaggtgagatctataacaaattttaatatatgggatctttttggtcgacatatgagggtctttttgtttataaaatctaat 17409993  T
Q  352 gaaaaa 357  Q
    ||||||    
T  17409992 gaaaaa 17409987  T

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Target: scaffold0045 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 25540 - 25598
Alignment:
Q  253 gtccaataaattttatttgtagaagaggtctaaaacaaattttaatatatgagacattt 311  Q
    ||||||||| ||||| | ||| |  ||||| ||||||||||||||||||||||||||||    
T  25540 gtccaataatttttaatagtaaataaggtccaaaacaaattttaatatatgagacattt 25598  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 398
Target Start/End: Original strand, 39104066 - 39104168
Alignment:
Q  292 ttttaatatatgagacatttttagtctatatatgaagcctttttgtttataatatctaaggaaaaatatttttgttttgttgggaagcttaatgcgaggg 391  Q
    |||||||||||| |   ||||| |||| ||||||| || ||||||||||||| || ||| ||||||||||    ||||||||| | || ||| |||||||    
T  39104066 ttttaatatatgtggtcttttttgtctgtatatgaggcatttttgtttataaaatataatgaaaaatatt----ttttgttggtaggcctaaagcgaggg 39104161  T
Q  392 ctttagt 398  Q
    |||||||    
T  39104162 ctttagt 39104168  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 364
Target Start/End: Complemental strand, 43200513 - 43200432
Alignment:
Q  283 taaaacaaattttaatatatgagacatttttagtctatatatgaagcctttttgtttataatatctaaggaaaaatattttt 364  Q
    ||||| ||||||||||||||||||  |||||||||  || |||| |  ||||||||||||| || ||| |||||||| ||||    
T  43200513 taaaataaattttaatatatgagatttttttagtccgtaaatgaggaatttttgtttataaaatataatgaaaaataatttt 43200432  T

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