View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18371_low_12 (Length: 371)
Name: NF18371_low_12
Description: NF18371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18371_low_12 |
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| [»] scaffold0130 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 154 - 355
Target Start/End: Complemental strand, 36284108 - 36283908
Alignment:
| Q |
154 |
aaatctataagcctctattaatagttttaataaattgctcaacaattgtttggtacttgagcagcagcctttgtcactctttgatccttttttaatagat |
253 |
Q |
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||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36284108 |
aaatctataagcctctattcatagttttaataaatttctcaacaattgtttggtacttgagcagcagcctttgtcactctttgatccttttt-aatagat |
36284010 |
T |
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| Q |
254 |
ccatatctagttggaaattgcttactaaaagtactaatttcattgaatgttattatcgcaatcagcctgcacaataattcaggtatgaatgcacattact |
353 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| | | ||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36284009 |
ccatatctagttggaaattgcttactaaaagtgctaatttgaataaatattattatcacaatcagcctgcacaataattcaggtatgaatgcacattact |
36283910 |
T |
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| Q |
354 |
ct |
355 |
Q |
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|| |
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| T |
36283909 |
ct |
36283908 |
T |
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Back To:
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Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 154 - 236
Target Start/End: Complemental strand, 40571794 - 40571712
Alignment:
| Q |
154 |
aaatctataagcctctattaatagttttaataaattgctcaacaattgtttggtacttgagcagcagcctttgtcactctttg |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40571794 |
aaatctataagcctctattaatagttttaataaatttctcaataattgtttggtacttgagcagcagcctttgtcactctttg |
40571712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 154 - 236
Target Start/End: Complemental strand, 19913300 - 19913218
Alignment:
| Q |
154 |
aaatctataagcctctattaatagttttaataaattgctcaacaattgtttggtacttgagcagcagcctttgtcactctttg |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
19913300 |
aaatctataagcctctattaatagttttaataaatttctcaataattgtttggtacttgagcagcagcctttgtcactctttg |
19913218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0130 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: scaffold0130
Description:
Target: scaffold0130; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 154 - 246
Target Start/End: Complemental strand, 18343 - 18251
Alignment:
| Q |
154 |
aaatctataagcctctattaatagttttaataaattgctcaacaattgtttggtacttgagcagcagcctttgtcactctttgatcctttttt |
246 |
Q |
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|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||| |
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| T |
18343 |
aaatctataagcctctattactagttttaatgaattgctcaacaattgtttggtacttgagcagtcgcctttttcactctttgttcctttttt |
18251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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