View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18371_low_13 (Length: 346)
Name: NF18371_low_13
Description: NF18371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18371_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 14598201 - 14597870
Alignment:
| Q |
1 |
gaagcatttgaaggagactggggctgaccctttggagcctgttaaagtattaaaggccacttggatggctgatggcacccattggcccggcacttggggt |
100 |
Q |
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| T |
14598201 |
gaagcatttgaaggagactggggctgaccctttggagcctgttaaagtattgaaggccacttggatggctgatggcacccattggcccggcacttggggt |
14598102 |
T |
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| Q |
101 |
tcttcttctagggaacatgctaaaggtgaccatgccggaatacttcaggtatttactcatatat--tatacctaagaataaattcaatcctgaactttaa |
198 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
14598101 |
tcttcttctagcgaacatgctaaaggtgaccatgccggaatacttcaggtatttactcatatattatatatctaagaataaattcaatcctgaactttaa |
14598002 |
T |
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| Q |
199 |
cttatgtttcacatatatatcataatttaaatgcatgcatgtatataaataggttatgttgaagccgcccagtcccgatccattaatgggaagtgcagac |
298 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||||||||| |||| |
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| T |
14598001 |
cttatgtttcacatatatttcataatttaaatgcatgcatgtatataaataggtgatgttgaagccgcccagccctgatccgttaatgggaagtgaagac |
14597902 |
T |
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| Q |
299 |
gacaagatcatagatttctctgaggtagatac |
330 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
14597901 |
gacaagatcatagatttctctgaggtagatac |
14597870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 14610275 - 14610456
Alignment:
| Q |
1 |
gaagcatttgaaggagactggggctgaccctttggagcctgttaaagtattaaaggccacttggatggctgatggcacccattggcccggcacttggggt |
100 |
Q |
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|||||| || ||||||| ||||||||| |||| ||||| | || ||| ||||||| || |||||||||||||||||||||||||| || || |||| | |
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| T |
14610275 |
gaagcaattcaaggagagtggggctgatccttctaagcctatcaaggtaataaaggctacctggatggctgatggcacccattggcctggtacgtgggct |
14610374 |
T |
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| Q |
101 |
tcttcttctagggaacatgctaaaggtgaccatgccggaatacttcaggtatttactcatatattatacctaagaataaatt |
182 |
Q |
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||||||||||| ||||||||||||||||||||| | |||||||||||||||||| || | ||||||| ||||||||||||| |
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| T |
14610375 |
tcttcttctagcgaacatgctaaaggtgaccattctggaatacttcaggtattttcttgtgtattatatctaagaataaatt |
14610456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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