View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18371_low_14 (Length: 346)
Name: NF18371_low_14
Description: NF18371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18371_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 6 - 327
Target Start/End: Complemental strand, 54963615 - 54963294
Alignment:
| Q |
6 |
taagaaatggcacaacagcatgaatcaatcaatgaataacatagaaatgagagattaaaaagaacctgagcatgaagtatgcaatcacggcccgagaaaa |
105 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
54963615 |
taagaaatggcacaacaacatgaatcaatcaatgaataacatagaaatgagagattaaaaagaacctgagcatgaagtatgcaatcacggcctgagaaaa |
54963516 |
T |
|
| Q |
106 |
gacgaggcaatgcttgtttctggaccggtgtaggcatgacatatccaacttcttccatcctgaaaccatattacaaaattaataatgataaagcagatta |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54963515 |
gacgaggcaatgcttgtttctggaccggtgtaggcatgacatatccaacttcttccatcctgaaaccatattacaaaattaataatgataaagcagatta |
54963416 |
T |
|
| Q |
206 |
gattgtgtggaaaaataataaaattgaaattaatttgagaataatggaaattagagttgaaattgcctttggagtaattggtcgggaacatgagattgac |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54963415 |
gattgtgtggaaaaataataaaattgaaattaatttgagaataatggaaattagagttgaaattgcctttggagtaattggtcgggaacatgagattgac |
54963316 |
T |
|
| Q |
306 |
ataattgtctgagagtgatggg |
327 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
54963315 |
ataattgtctgagagtgatggg |
54963294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University