View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18371_low_15 (Length: 344)
Name: NF18371_low_15
Description: NF18371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18371_low_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 28881483 - 28881808
Alignment:
| Q |
1 |
gtggtgatgtttcagaatataccaaatcaatgggctaaaagggtgtttgatgatattgaaaatcttacagaagagagaatagataaagtactaatagagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28881483 |
gtggtgatgtttcagaatataccaaatcaatgggctaaaagggtgtttgatgatattgaaaatcttacagaagagagaatagataaagtactaatagagt |
28881582 |
T |
|
| Q |
101 |
ttatcaaagatttcaaagaaggttcactagaaaacaaagggtggccaaccttcttgtcaacctatattgtctcaaaagcagcaacaaattcttacacaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28881583 |
ttatcaaagatttcaaagaaggttcactagaaaacaaagggtggccaaccttcttgtcaacctatattgtctcaaaagcagcaacaaattcttacacaag |
28881682 |
T |
|
| Q |
201 |
gattctagccaagaagtatccaaacatgtgcatcaattgtg-gtgtcctggttatgtgaaaacagacctcaccaaaaacattggcatgttatctgttgac |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28881683 |
gattctagccaagaagtatccaaacatgtgcatcaattgtgtgtgtcctggttatgtgaaaacagacctcaccaaaaacattggcatgttatctgttgac |
28881782 |
T |
|
| Q |
300 |
caaggtgctgctagtgttgtgagatt |
325 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
28881783 |
caaggtgctgctagtgttgtgagatt |
28881808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 2 - 325
Target Start/End: Original strand, 28886265 - 28886589
Alignment:
| Q |
2 |
tggtgatgtttcagaatataccaaatcaatgggctaaaagggtgtttgatgatattgaaaatcttacagaagagagaatagataaagtactaatagagtt |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||| |||||| |
|
|
| T |
28886265 |
tggtgatgtttcagaatataccaaatcaatgggctaaaagggtgtttgatgatattgaaaatcttacagaagagaaaatagatgaggtactaaaagagtt |
28886364 |
T |
|
| Q |
102 |
tatcaaagatttcaaagaaggttcactagaaaacaaagggtggccaaccttcttgtcaacctatattgtctcaaaagcagcaacaaattcttacacaagg |
201 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| || |||| |||||||| ||||||||||||| | |||||||||||||| |
|
|
| T |
28886365 |
tatcaaagacttcaaagaaggttcactagaaaacaaagggtggccaacaatcatgtctgcctatattatctcaaaagcagccatgaattcttacacaaga |
28886464 |
T |
|
| Q |
202 |
attctagccaagaagtatccaaacatgtgcatcaattgtg-gtgtcctggttatgtgaaaacagacctcaccaaaaacattggcatgttatctgttgacc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||| ||| |||||||| |||||||||| ||||||||| |
|
|
| T |
28886465 |
attctagccaagaagtatccaaacatgtgcatcaattgtgtgtgtcctggttttgttaaaacagacatcaacaaaaacactggcatgttacctgttgacc |
28886564 |
T |
|
| Q |
301 |
aaggtgctgctagtgttgtgagatt |
325 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
28886565 |
aaggtgctgctagtgttgtgagatt |
28886589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 149
Target Start/End: Original strand, 28889102 - 28889243
Alignment:
| Q |
8 |
tgtttcagaatataccaaatcaatgggctaaaagggtgtttgatgatattgaaaatcttacagaagagagaatagataaagtactaatagagtttatcaa |
107 |
Q |
| |
|
|||||||||||||| ||||| | ||||||| || |||||| |||| |||||||| || ||| | || | ||||||| | || |||| ||||||| || |
|
|
| T |
28889102 |
tgtttcagaatatatcaaatgagtgggctagaatagtgtttaatgacattgaaaacctaacaaaggaaaaaatagatgaggtgctaaaagagtttgagaa |
28889201 |
T |
|
| Q |
108 |
agatttcaaagaaggttcactagaaaacaaagggtggccaac |
149 |
Q |
| |
|
||||| ||||||||| |||||||| | ||||| |||||||| |
|
|
| T |
28889202 |
agattacaaagaaggatcactagagatcaaagattggccaac |
28889243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 122
Target Start/End: Complemental strand, 12002957 - 12002886
Alignment:
| Q |
51 |
tgatattgaaaatcttacagaagagagaatagataaagtactaatagagtttatcaaagatttcaaagaagg |
122 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||| ||||||| |
|
|
| T |
12002957 |
tgatgttgaaaatcttacagaagagagaatagatgaagtgataaaggagtttatcaaagattttgaagaagg |
12002886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 51 - 113
Target Start/End: Complemental strand, 11986897 - 11986835
Alignment:
| Q |
51 |
tgatattgaaaatcttacagaagagagaatagataaagtactaatagagtttatcaaagattt |
113 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||| ||||| ||| ||||||||||||||||| |
|
|
| T |
11986897 |
tgatgttgaaaatcttacagatgagagaatagatgaagtaataaaggagtttatcaaagattt |
11986835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 146
Target Start/End: Complemental strand, 11996446 - 11996351
Alignment:
| Q |
51 |
tgatattgaaaatcttacagaagagagaatagataaagtactaatagagtttatcaaagatttcaaagaaggttcactagaaaacaaagggtggcc |
146 |
Q |
| |
|
|||| ||||||| ||||||||||| ||||||||| |||| || ||||||||||||||||| |||||||||| |||||| ||||| ||||| |
|
|
| T |
11996446 |
tgatgttgaaaaccttacagaagaaagaatagatgaagtgttagaggagtttatcaaagattttgaagaaggttccttagaaagtaaaggttggcc |
11996351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 122
Target Start/End: Complemental strand, 12008183 - 12008112
Alignment:
| Q |
51 |
tgatattgaaaatcttacagaagagagaatagataaagtactaatagagtttatcaaagatttcaaagaagg |
122 |
Q |
| |
|
|||| ||||||| ||||||||||| ||||||||| |||| ||| ||||||||||||||||| ||||||| |
|
|
| T |
12008183 |
tgatgttgaaaaccttacagaagaaagaatagatgaagtgataaatgagtttatcaaagattttgaagaagg |
12008112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University