View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18371_low_18 (Length: 324)
Name: NF18371_low_18
Description: NF18371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18371_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 53110086 - 53109788
Alignment:
| Q |
18 |
ctataaattaaatcacccatcgctcatctattaacagtagtcttttctctgattgcaacgtaattatctttataggaaacaagatatcgtttacgctttt |
117 |
Q |
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| T |
53110086 |
ctataaattaaatcacccatcgctcatctattaacagtagtcttttctcttattgcaacgtaattatctttataggaaacaagatatcgtttacgctttt |
53109987 |
T |
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| Q |
118 |
tggatttgatattgaattcagaaattcgagaaatattcaaaactagaagtaatatcatttcttacatccgaagattccttgatggccttgatttcatgga |
217 |
Q |
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| T |
53109986 |
tggatttgatattgaattcagaaattcgagaaatattcaaaactagaagtaatatcatttcttacatccgaagattccttgatggccttgatttcatgga |
53109887 |
T |
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| Q |
218 |
ggtttgttctgtccaaatattctgatgccagttgcttataatatcttccattccctttacctattctttccactactttcaggttgaaacacctatgat |
316 |
Q |
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| T |
53109886 |
ggtttgttctgtccaaatattctgatgccagttgcttataatatcttccattccctttacctactcttttcactactttcaggttgaaacacctatgat |
53109788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 44 - 316
Target Start/End: Complemental strand, 53115485 - 53115210
Alignment:
| Q |
44 |
tctattaacagtagtcttttctctgattgcaacgtaattatctt-tataggaaacaagatatcgtttacgctttttggatttgatattgaattcagaaat |
142 |
Q |
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| T |
53115485 |
tctattaatagtggtctcttttcttattgcaacgtaattgtcttgtataggaaacaagacatcgtttacgccccttggatttgatattgaattcagatat |
53115386 |
T |
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| Q |
143 |
tcgagaaatattcaaaactagaagtaatatcatttcttacatccgaagattccttgatggccttgatttcatggaggtttgttct--gtccaaatattct |
240 |
Q |
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| T |
53115385 |
tcgagaaatattccacactagaaatagaatcatttcttacatccagaggcaccttgatgaccttgattttatggaggtttgttctctgtccaagtattct |
53115286 |
T |
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| Q |
241 |
gatgccagttgcttataatatcttccattccctttacctattctttccactactttcaggttgaaacacctatgat |
316 |
Q |
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| T |
53115285 |
gatgccagttgcttatactatcttccatcccctttacctattcttttcgctactttcaggttgaaacacctatgat |
53115210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 29 - 316
Target Start/End: Complemental strand, 53127919 - 53127630
Alignment:
| Q |
29 |
atcacccatcgctcatctattaacagtagtcttttctctgattgcaacgtaattatcttt-ataggaaacaagatatcgtttacgctttttggatttgat |
127 |
Q |
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| T |
53127919 |
atcacccatcactcatctattaacagtagtcttttttcttattacaac-tcattatcttttataggaaacaagatatcgttcacgccatttggatttgat |
53127821 |
T |
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| Q |
128 |
attgaattcagaaattcgagaaatattcaaaactagaagtaatatcatttcttacatccgaagattccttgatggccttgatttcatggaggtttgttct |
227 |
Q |
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||| || | ||| ||||||||||||||||||||||| |||| ||| || ||||| || | || |||||||| || ||||||| |||||||||||||| |
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| T |
53127820 |
gttgcatcctgaagttcgagaaatattcaaaactagatgtaaaatcgttaaatacattcggaaataccttgatgaccgtgatttcttggaggtttgttct |
53127721 |
T |
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| Q |
228 |
--gtccaaatattctgatgccagttgcttataatatcttccattccctttacctattctttccactactttcaggttgaaacacctatgat |
316 |
Q |
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|||||| |||||||| ||| |||||||||| |||| | |||| ||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
53127720 |
ctgtccaagtattctgacaccatctgcttataatttctttccttccatttaccttttcttttcactactttcaggttgaaacacctatgat |
53127630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 182
Target Start/End: Original strand, 15839134 - 15839229
Alignment:
| Q |
87 |
ttataggaaacaagatatcgtttacgctttttggatttgatattgaattcagaaattcgagaaatattcaaaactagaagtaatatcatttcttac |
182 |
Q |
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||||||||||| |||||||| |||||| |||||||||||| | ||| |||| ||||||||||||||| ||||| ||| |||||||||||| |
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| T |
15839134 |
ttataggaaactagatatcggttacgccatttggatttgatgcttaatacagaggttcgagaaatattcaggactaggtctaaaatcatttcttac |
15839229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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