View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18371_low_2 (Length: 678)
Name: NF18371_low_2
Description: NF18371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18371_low_2 |
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| [»] scaffold0423 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 85 - 663
Target Start/End: Complemental strand, 1447954 - 1447393
Alignment:
| Q |
85 |
aagctcttattatcccaactatgatataacccatctttctttaccatccaatagatattgggatgaccttggtcataatgggaatcatacgcagagaatg |
184 |
Q |
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| T |
1447954 |
aagctcttattatcccaactatgatataacccatcttgctttaccatccaatagatattgggatgaccttggtcataatgggaatcatacgcagagaatg |
1447855 |
T |
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| Q |
185 |
gagctctaaactcatgccaatctgtaatacaattttcagatgtttctgcagggaaactccaataaaagggattttgtggatgaaggtgtgcgttaatacc |
284 |
Q |
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| T |
1447854 |
gagctcttaactcatgccaatctgtaaaacaattttcagatgtttctgcagggaaactccaataaaagggattttgtggatgaaggtgtgcgttaatacc |
1447755 |
T |
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| Q |
285 |
aggctgacttgtacagaaaagtaaaacatcatcttgcaaaatattaaggatatgaattgtaacaaaagatgcattgcataaggcaaataaaagcggtaag |
384 |
Q |
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| T |
1447754 |
aggctgactcgtacagaaaagtaaaacatcatctgacaaaatattaaggatatgaattgtaacaaaagatgcattgcataagccaaataaaagcggtaag |
1447655 |
T |
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| Q |
385 |
agcaacaacacgggaacatagtttatagttgacatgttgaatatttgaagaaaatatgaccctaataataaaacaaaccaaaacaataactttgatttct |
484 |
Q |
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| T |
1447654 |
agcaacaacacaggaacatagtttatagttgacatgt--------tgaagtaaatatgatcctaataataaaac-------aataacttctttgatttct |
1447570 |
T |
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| Q |
485 |
aaaacttgaatgatgaagttacattaaggaactaatattaatagaagtaggnnnnnnntaaatgattataagcaagatgacaagtgtcacaacagttaca |
584 |
Q |
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| T |
1447569 |
aaaacttgaatgatgaagttacattaaggaactaatatttaaagaagtagg-aaaaaatatatgattataagcaagatgacaagtgtcacaccaattaca |
1447471 |
T |
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| Q |
585 |
tgcagtagaccaactgttactcatgcaacaaattaagttctcttaagcaataa---gcaatgtgtcattcatgcaagatagt |
663 |
Q |
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| T |
1447470 |
tgcagtggaccaactgttactcatgcaaca----aagttctcttatgcaataagctgccatgtgtagttcatgcaagatagt |
1447393 |
T |
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Back To:
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Target: scaffold0423 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0423
Description:
Target: scaffold0423; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 160
Target Start/End: Complemental strand, 11522 - 11463
Alignment:
| Q |
101 |
aactatgatataacccatctttctttaccatccaatagatattgggatgaccttggtcat |
160 |
Q |
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| T |
11522 |
aactttgatataatccatctttctctacattccaatatataatgggatgaccttggtcat |
11463 |
T |
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