View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18371_low_21 (Length: 316)
Name: NF18371_low_21
Description: NF18371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18371_low_21 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 11 - 315
Target Start/End: Complemental strand, 39470374 - 39470070
Alignment:
| Q |
11 |
caaaggcctcaagaatgctgatggcattattgtcaattcatttgaagagctagaatcctatgtggttcactcctttttctctcattctgaactagctggt |
110 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||| |
|
|
| T |
39470374 |
caaaggcctcaagaatgccgatggcattattgtcaattcatttgaagagctagaatcctatgcggttcactcctttttctctcatcccgaactagctggt |
39470275 |
T |
|
| Q |
111 |
ttatccatatatccaataggacccatgttaaacctagagcccaaaaccaagggcaccgttgattctgacgatattgtcaagtggcttgatgatcatcctc |
210 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39470274 |
ttatccatatatccaataggacccatattaaacctagagcccaaaaccaagggcaccgttgattctgacgatattgtcaagtggcttgatgatcagcctc |
39470175 |
T |
|
| Q |
211 |
cttccacggtagctttcctctgcttcgggagcagggttttttcgatggggatcaggttaaggtgatcgcacttgctgtagagaatactggggtccgtttt |
310 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| || |
|
|
| T |
39470174 |
cttcctcggtagttttcctctgcttcgggagcagggttttttcgatgaggatcaggttaaggggatcgcacttgctgtagagaatactggggtccgtatt |
39470075 |
T |
|
| Q |
311 |
gtgtg |
315 |
Q |
| |
|
||||| |
|
|
| T |
39470074 |
gtgtg |
39470070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 12 - 315
Target Start/End: Complemental strand, 39457909 - 39457605
Alignment:
| Q |
12 |
aaaggcctcaagaatgctgatggcattattgtcaattcatttgaagagctagaatcctatgtggttcactcctttttctctcattctgaactagctggtt |
111 |
Q |
| |
|
||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||| |||| ||||| |||| |
|
|
| T |
39457909 |
aaaggtctcaagaatgctgatgccattattgtaaattcatttgaagagctagaatcctatgccgttcactcctttgtctctcatcctgatctagcaggtt |
39457810 |
T |
|
| Q |
112 |
tatccatatatccaataggacccatgttaaacctagagcccaaaaccaagggcaccgttgattctgacgatattgtcaagtggcttgatgatcatcctcc |
211 |
Q |
| |
|
|| |||||||||| ||||||| || ||||||| |||||||||||||| || || ||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
39457809 |
tacccatatatccggtaggaccaatattaaaccccaagcccaaaaccaagagcgccattgattctgacgatattgtcaagtggcttgatgatcaacctcc |
39457710 |
T |
|
| Q |
212 |
ttccacggtagctttcctctgcttcgggagca-gggttttttcgatggggatcaggttaaggtgatcgcacttgctgtagagaatactggggtccgtttt |
310 |
Q |
| |
|
|||| ||| || |||||||||||||||||||| ||| |||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
39457709 |
ttcctcggaagttttcctctgcttcgggagcagggggtttttcgatgaggatcaggttaaggagatcgcccttgctgtagagaatactggggtccgattt |
39457610 |
T |
|
| Q |
311 |
gtgtg |
315 |
Q |
| |
|
||||| |
|
|
| T |
39457609 |
gtgtg |
39457605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 12 - 302
Target Start/End: Complemental strand, 39464171 - 39463880
Alignment:
| Q |
12 |
aaaggcctcaagaatgctgatggcattattgtcaattcatttgaagagctagaatcctatgtggttcactcctttttctctcattctgaactagctggtt |
111 |
Q |
| |
|
|||||||||||||| |||||||| |||| || |||||||||||||||||||||||| ||| ||||| || ||||| ||| || || |||||||||| |
|
|
| T |
39464171 |
aaaggcctcaagaaggctgatggttttatagtaaattcatttgaagagctagaatcccatgcagttcattcatttttatctgatactattctagctggtt |
39464072 |
T |
|
| Q |
112 |
tatccatatatccaataggacccatgttaaacctagagcccaaaaccaagggcaccgttgattctgacgatattgtcaagtggcttgatgatcatcctcc |
211 |
Q |
| |
|
|| |||||||| | |||||||| ||||||| ||||||||||||||||| | || |||||| ||| ||||| ||||||||||||||||||| ||||| |
|
|
| T |
39464071 |
tacggatatatcctgtgggacccatattaaacccagagcccaaaaccaaggaccccattgattatgatgatatcatcaagtggcttgatgatcaacctcc |
39463972 |
T |
|
| Q |
212 |
ttccacggtagctttcctctgcttcgggagcag-ggttttttcgatggggatcaggttaaggtgatcgcacttgctgtagagaatactgggg |
302 |
Q |
| |
|
|||| | |||| ||||||||||||||||||||| |||| |||||||| ||||||||||||| ||| ||||||||| | ||||||| ||||| |
|
|
| T |
39463971 |
ttcctcagtagttttcctctgcttcgggagcagaggttctttcgatgaagatcaggttaaggagattgcacttgctattgagaatagtgggg |
39463880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 35 - 315
Target Start/End: Original strand, 39487047 - 39487328
Alignment:
| Q |
35 |
cattattgtcaattcatttgaagagctagaatcctatgtggttcactcctttttctctcattctgaactagctggtttatccatatatccaataggaccc |
134 |
Q |
| |
|
|||||| || ||||||||||||||| ||||||| ||| ||||| ||||||||||||||| |||| ||||| | ||| | |||||||| | |||||| |
|
|
| T |
39487047 |
cattatagtaaattcatttgaagagttagaatcacatgctgttcaatcctttttctctcatcctgatctagcagaattaccggtatatccagtgggaccc |
39487146 |
T |
|
| Q |
135 |
atgttaaacctagagcccaaaaccaagggcaccgttgattctgacgatattgtcaagtggcttgatgatcatcctccttccacggtagctttcctctgct |
234 |
Q |
| |
|
| ||||||| ||||||||||| |||||||||| ||| ||||| ||||| ||||||||||||||||||| ||||||||| |||||| ||||||||||| |
|
|
| T |
39487147 |
ttattaaaccccgagcccaaaactaagggcaccgatgagtctgatgatatcatcaagtggcttgatgatcaacctccttcctcggtagttttcctctgct |
39487246 |
T |
|
| Q |
235 |
tcgggagca-gggttttttcgatggggatcaggttaaggtgatcgcacttgctgtagagaatactggggtccgttttgtgtg |
315 |
Q |
| |
|
||||||||| ||| | |||||||| |||||||||||| | ||| |||| |||| | |||||| ||| | |||||||||||| |
|
|
| T |
39487247 |
tcgggagcaggggctctttcgatgaggatcaggttaaagagattgcacatgctattgagaattgtggagcccgttttgtgtg |
39487328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 12 - 269
Target Start/End: Original strand, 39472589 - 39472847
Alignment:
| Q |
12 |
aaaggcctcaagaatgctgatggcattattgtcaattcatttgaagagctagaatcctatgtggttcactcctttttctctcattctgaactagctggtt |
111 |
Q |
| |
|
|||||||||||||| ||||||||| |||| || |||||||||||||||||||||||| | | |||||||| ||| ||| || ||| | |||||||| |
|
|
| T |
39472589 |
aaaggcctcaagaacgctgatggctttatagtaaattcatttgaagagctagaatcccacgcagttcactcgatttcatctgatcctggtccagctggtt |
39472688 |
T |
|
| Q |
112 |
tatccatatatccaataggacccatgttaaacctagagcccaaaaccaagggcaccgttgattctgacgatattgtcaagtggcttgatgatcatcctcc |
211 |
Q |
| |
|
|| | |||||||| |||| ||||| | ||||| ||||||||||||||||||||||||||||| || || || ||||||||||||||||||| ||| | |
|
|
| T |
39472689 |
tacctatatatccggtagggcccatactgaacctggagcccaaaaccaagggcaccgttgattccgatgacatcatcaagtggcttgatgatcaacctgc |
39472788 |
T |
|
| Q |
212 |
ttccacggtagctttcctctgcttcgggagca-gggttttttcgatggggatcaggtta |
269 |
Q |
| |
|
||| | |||| ||||||||||||||| || | ||||| |||||| | ||||||||||| |
|
|
| T |
39472789 |
atcctcagtagttttcctctgcttcggaagtatgggttctttcgacgaggatcaggtta |
39472847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 14 - 302
Target Start/End: Original strand, 39476067 - 39476362
Alignment:
| Q |
14 |
aggcctcaagaatgctgatggcattattgtcaattcatttgaagagctagaatcctatgtggttcactcctttttctctcattctgaactagctggttta |
113 |
Q |
| |
|
|||||||||||| | |||||||||| || || |||||||||||||||||||| ||| ||||||||| |||||||||||| |||| ||| | | | || |
|
|
| T |
39476067 |
aggcctcaagaaagtaaatggcattatagtaaactcatttgaagagctagaatcacatgcggttcactcttttttctctcatcctgatctatcggatata |
39476166 |
T |
|
| Q |
114 |
tccatatatccaataggacccatgttaaacctagagcccaaaaccaagggcaccgttga------ttctgacgatattgtcaagtggcttgatgatcatc |
207 |
Q |
| |
|
|||||||| | ||||| | |||||||| ||||||||||| |||||||| ||||| |||||| ||| | | ||||||||||||||||| | |
|
|
| T |
39476167 |
ctgatatatccggtgggacctttattaaaccttgagcccaaaacaaagggcactgttgacgctgattctgatgatgtaatgaagtggcttgatgatcaac |
39476266 |
T |
|
| Q |
208 |
ctccttccacggtagctttcctctgcttcgggagca-gggttttttcgatggggatcaggttaaggtgatcgcacttgctgtagagaatactgggg |
302 |
Q |
| |
|
|||||||| | |||| |||||||||||||||||| | ||||| ||| |||| ||||||||||||| |||||||| |||||| ||||||| ||||| |
|
|
| T |
39476267 |
ctccttcctccgtagttttcctctgcttcgggagtaggggttattttgatgaagatcaggttaaggagatcgcacatgctgttgagaatagtgggg |
39476362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 13 - 302
Target Start/End: Original strand, 39451560 - 39451850
Alignment:
| Q |
13 |
aaggcctcaagaatgctgatggcattattgtcaattcatttgaagagctagaatcctatgtggttcactcctttttctctcattctgaactagctggttt |
112 |
Q |
| |
|
|||||||||||||||| ||||||||||| || ||||||||||||||||||||||| | | |||||||||||||||| |||| ||||| || | |||| |
|
|
| T |
39451560 |
aaggcctcaagaatgccgatggcattatagtaaattcatttgaagagctagaatcacacgcggttcactcctttttcaatcatcctgaattaacaagttt |
39451659 |
T |
|
| Q |
113 |
atc---catatatccaataggacccatgttaaacctagagcccaaaaccaagggcaccgttgattctgacgatattgtcaagtggcttgatgatcatcct |
209 |
Q |
| |
|
| | |||||||| ||||||| || |||| | |||||||||||||||| | |||| |||| ||||| |||| |||||||||||||| ||| |
|
|
| T |
39451660 |
accaattatatatccggtaggacctatattaagtcctgagcccaaaaccaaggacgttgttggttct---gatatcatcaactggcttgatgatcaacct |
39451756 |
T |
|
| Q |
210 |
ccttccacggtagctttcctctgcttcgggagca-gggttttttcgatggggatcaggttaaggtgatcgcacttgctgtagagaatactgggg |
302 |
Q |
| |
|
| ||| | || | |||||||||||| ||||||| ||||| |||||||| ||| |||||||||| |||||||| |||| | ||||||| ||||| |
|
|
| T |
39451757 |
ctttcttctgttgttttcctctgctttgggagcaggggttgtttcgatgaggaccaggttaaggagatcgcacatgctattgagaatagtgggg |
39451850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 281
Target Start/End: Original strand, 39460809 - 39461079
Alignment:
| Q |
15 |
ggcctcaagaatgctgatggcattattgtcaattcatttgaagagctagaatcctatgtggttcactcctttttctctcattctgaactagctggtttat |
114 |
Q |
| |
|
||||||||||| || |||| ||||| || |||||||||||||||||||||||| ||| ||||| || ||||||||||| |||| |||||| ||||| |
|
|
| T |
39460809 |
ggcctcaagaaagcaaatggtattatagtaaattcatttgaagagctagaatcccatgcagttcaatcatttttctctcaccctgatctagctagtttac |
39460908 |
T |
|
| Q |
115 |
cc---atatatccaataggacccatgttaaacctagagcccaaaaccaagggcaccgttgattctgacgatattgtcaagtggcttgatgatcatcctcc |
211 |
Q |
| |
|
| || ||||| ||||||||| |||||| ||||||||||||||||| || |||| ||| || ||||| ||||||||||||||||||| |||| |
|
|
| T |
39460909 |
cggttatttatccggcaggacccattataaaccctgagcccaaaaccaagggaacagttggttcagatgatatcatcaagtggcttgatgatcaacctct |
39461008 |
T |
|
| Q |
212 |
ttccacggtagctttcctctgcttcgggagca-gggttttttcgatggggatcaggttaaggtgatcgcac |
281 |
Q |
| |
|
|||| | |||| |||||||||||| |||| | |||| ||||||| ||||||| |||||| |||||||| |
|
|
| T |
39461009 |
ttcctccgtagttttcctctgctttgggactaggggtaccttcgatgaggatcagattaaggagatcgcac |
39461079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 14 - 280
Target Start/End: Original strand, 39455188 - 39455455
Alignment:
| Q |
14 |
aggcctcaagaatgctgatggcattattgtcaattcatttgaagagctagaatcctatgtggttcactcctttttctctcattctgaactagctggttta |
113 |
Q |
| |
|
||||||||||||||| ||||| || || || |||||||||||||| || ||||| ||| |||||||||||||||||||||| ||||| || | ||||| |
|
|
| T |
39455188 |
aggcctcaagaatgccgatggaatcatagtaaattcatttgaagatcttgaatctcatgcggttcactcctttttctctcatcctgaattaacaagttta |
39455287 |
T |
|
| Q |
114 |
tc---catatatccaataggacccatgttaaacctagagcccaaaaccaagggcaccgttgattctgacgatattgtcaagtggcttgatgatcatcctc |
210 |
Q |
| |
|
| |||||||| ||||||| || |||| | |||||||||||||||| || |||| |||| ||||| ||||||||||||||||||| |||| |
|
|
| T |
39455288 |
ccaattatatatccggtaggacctatattaagtcctgagcccaaaaccaaggacattgttggttct---gatatcatcaagtggcttgatgatcaacctc |
39455384 |
T |
|
| Q |
211 |
cttccacggtagctttcctctgcttcgggagc-agggttttttcgatggggatcaggttaaggtgatcgca |
280 |
Q |
| |
|
|||| | || | |||||| |||||||| ||| | |||| ||| |||| |||||||||||||| ||||||| |
|
|
| T |
39455385 |
tttcctccgtcgttttcctttgcttcggaagcaaaggttgttttgatgaggatcaggttaaggagatcgca |
39455455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 302
Target Start/End: Original strand, 39483818 - 39484113
Alignment:
| Q |
14 |
aggcctcaagaatgctgatggcattattgtcaattcatttgaagagctagaatcctatgtggttcactcctttttctctcattctgaactagctggttta |
113 |
Q |
| |
|
|||||||||||| | |||||||||| || ||||||||| ||||||||||||| | | ||||||||| |||||| ||||| | || ||| | | | || |
|
|
| T |
39483818 |
aggcctcaagaaagtaaatggcattatagtaaattcattttaagagctagaatctcacgcggttcactcttttttcactcatccagatctatcggatata |
39483917 |
T |
|
| Q |
114 |
tccatatatccaataggacccatgttaaacctagagcccaaaaccaagggcaccgttga------ttctgacgatattgtcaagtggcttgatgatcatc |
207 |
Q |
| |
|
|||||||| | ||||| | ||||||| ||||| ||||| |||||||| ||||| |||||| ||||| | ||||||||| || |||| | |
|
|
| T |
39483918 |
cagatatatccggtgggacctttattaaaccctgagcctaaaacaaagggcactgttgacgctgattctgatgatataatgaagtggcttcataatcaac |
39484017 |
T |
|
| Q |
208 |
ctccttccacggtagctttcctctgcttcgggagca-gggttttttcgatggggatcaggttaaggtgatcgcacttgctgtagagaatactgggg |
302 |
Q |
| |
|
|||||||| | |||| |||||||||||| ||||| | ||||| ||| |||| ||||||||||||| |||||||| || ||| ||||||| ||||| |
|
|
| T |
39484018 |
ctccttcctccgtagttttcctctgctttgggagtaggggttattttgatgaagatcaggttaaggagatcgcacatgttgttgagaatagtgggg |
39484113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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