View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18371_low_22 (Length: 314)
Name: NF18371_low_22
Description: NF18371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18371_low_22 |
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| [»] scaffold0602 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 32 - 309
Target Start/End: Complemental strand, 8621003 - 8620726
Alignment:
| Q |
32 |
aattcaaattgttgagttataactataaattcctcattctctataactgcaacaatttccttgcaatcacctatacaaagatggttgagcttggagcagc |
131 |
Q |
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|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8621003 |
aattcaaattgttgagttataaatataaattcttcattctctataactgcaacaatttccttgcaatcacctatacaaagatggttgagcttggagcagc |
8620904 |
T |
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| Q |
132 |
aaatgactacagaaagaggaaatacatgctccaagcttccacactgatgtatatgtagttcttctagatcatgaaaattcagaactccattaggatccat |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8620903 |
aaatgactacagaaagaggaaatacatgctccaagcttccacactgatgtatatgtagttcttctagatcatgaaaattcagaactccattaggatccat |
8620804 |
T |
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| Q |
232 |
actctgtatcttttttagctttggtaatgtttctnnnnnnncatatttcaactgagtcgtgtcttctatacgcctttg |
309 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8620803 |
actccatatcttttttagctttggtaatgtttctaaaaaaacatatttcaactgagtcgtgtcttctatacgcctttg |
8620726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 32 - 263
Target Start/End: Original strand, 8638047 - 8638278
Alignment:
| Q |
32 |
aattcaaattgttgagttataactataaattcctcattctctataactgcaacaatttccttgcaatcacctatacaaagatggttgagcttggagcagc |
131 |
Q |
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|||||||||||| ||| ||||| || | | |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
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| T |
8638047 |
aattcaaattgtggaggtataaatacagaatcctcattctctataactgcaacaatttccttgcaatcacttatacaaagactgttgagcttggagcagg |
8638146 |
T |
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| Q |
132 |
aaatgactacagaaagaggaaatacatgctccaagcttccacactgatgtatatgtagttcttctagatcatgaaaattcagaactccattaggatccat |
231 |
Q |
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|| |||||||||||||||||| ||||||||| |||||||||||||||| |||||||||| |||| ||||||||||||||||||||||| ||||||||||| |
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| T |
8638147 |
aagtgactacagaaagaggaagtacatgctctaagcttccacactgatatatatgtagtccttccagatcatgaaaattcagaactcctttaggatccat |
8638246 |
T |
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| Q |
232 |
actctgtatcttttttagctttggtaatgttt |
263 |
Q |
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|||| ||||||||||| ||||||||||||| |
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| T |
8638247 |
actccatatcttttttacatttggtaatgttt |
8638278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0602 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0602
Description:
Target: scaffold0602; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 32 - 309
Target Start/End: Original strand, 3444 - 3721
Alignment:
| Q |
32 |
aattcaaattgttgagttataactataaattcctcattctctataactgcaacaatttccttgcaatcacctatacaaagatggttgagcttggagcagc |
131 |
Q |
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|||||||||||| ||| ||||| || | | |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
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| T |
3444 |
aattcaaattgtggaggtataaatacagaatcctcattctctataactgcaacaatttccttgcaatcacttatacaaagactgttgagcttggagcagg |
3543 |
T |
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| Q |
132 |
aaatgactacagaaagaggaaatacatgctccaagcttccacactgatgtatatgtagttcttctagatcatgaaaattcagaactccattaggatccat |
231 |
Q |
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|| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3544 |
aagtgactacagaaagaggaagtacatgctctaagcttccacactgatgtatatgtagttcttctagatcatgaaaattcagaactccattaggatccat |
3643 |
T |
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| Q |
232 |
actctgtatcttttttagctttggtaatgtttctnnnnnnncatatttcaactgagtcgtgtcttctatacgcctttg |
309 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3644 |
actccatatcttttttagctttggtaatgtttctaaaaaaacatatttcaactgagtcgtgtcttctatacgcctttg |
3721 |
T |
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