View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18371_low_23 (Length: 298)
Name: NF18371_low_23
Description: NF18371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18371_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 293
Target Start/End: Complemental strand, 27776520 - 27776244
Alignment:
| Q |
18 |
aagggaaggataaggaaaggtgataggatttggcaaattgcatttgggtctggatttaaatgtaacactgctgtttggtgtgctttaaggaatgttgatc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27776520 |
aagggaaggataaggaaaggtgataggatttggcaaattgcatttgggtctggatttaaatgtaacactgctgtttggtgtgctttaaggaatgttgatc |
27776421 |
T |
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| Q |
118 |
ctgttaaggagattaatccttggagtgatgaggttcatgaatttcctgttgatgtttcaaaatgatgttagtaacctacttgggctgacatgatcatatt |
217 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27776420 |
ctgttaaggagattaatccttggagtgatgagcttcatgaatttcctgttgatgtttcaaaatgatgttagtaacctacttgggctgacatgatcatatt |
27776321 |
T |
|
| Q |
218 |
gtcttgggacctgaaaatgtgctcctcctcaagatttctgattcaattcaccctgatgt-agtttgagtggtctctg |
293 |
Q |
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|||||||||||||||| ||||||||||||||| |||||| ||| |||||||||||||| |||||||||||| |||| |
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| T |
27776320 |
gtcttgggacctgaaagtgtgctcctcctcaaagtttctggttcgattcaccctgatgtcagtttgagtggtttctg |
27776244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 119
Target Start/End: Original strand, 10280063 - 10280138
Alignment:
| Q |
44 |
gatttggcaaattgcatttgggtctggatttaaatgtaacactgctgtttggtgtgctttaaggaatgttgatcct |
119 |
Q |
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|||||||||||| || ||||| ||||||||||| ||| ||||||||||||| |||||| | ||||||||||||| |
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| T |
10280063 |
gatttggcaaatggcttttggatctggatttaaggttaatactgctgtttggtatgctttgaagaatgttgatcct |
10280138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 7e-55; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 21 - 177
Target Start/End: Complemental strand, 19742878 - 19742722
Alignment:
| Q |
21 |
ggaaggataaggaaaggtgataggatttggcaaattgcatttgggtctggatttaaatgtaacactgctgtttggtgtgctttaaggaatgttgatcctg |
120 |
Q |
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| T |
19742878 |
ggaagaataagaaaaggtgataggatttggcaaattgcatttgggtctggatttaagtgtaacactgctgtttggtgtgcattaaggaatgttgatccaa |
19742779 |
T |
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| Q |
121 |
ttaaggagattaatccttggagtgatgaggttcatgaatttcctgttgatgtttcaa |
177 |
Q |
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|||| ||||| |||||||||||||||||| | |||| ||||||||||||||||||| |
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| T |
19742778 |
ttaaagagatcaatccttggagtgatgagataaatgagtttcctgttgatgtttcaa |
19742722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 21 - 177
Target Start/End: Original strand, 19797210 - 19797366
Alignment:
| Q |
21 |
ggaaggataaggaaaggtgataggatttggcaaattgcatttgggtctggatttaaatgtaacactgctgtttggtgtgctttaaggaatgttgatcctg |
120 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
19797210 |
ggaagaataagaaaaggtgataggatttggcaaattgcatttgggtctggatttaagtgtaacactgctgtttggtgtgcattaaggaatgttgatccaa |
19797309 |
T |
|
| Q |
121 |
ttaaggagattaatccttggagtgatgaggttcatgaatttcctgttgatgtttcaa |
177 |
Q |
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|||| ||||| |||||||||||||||||| | |||| ||||||||||||||||||| |
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| T |
19797310 |
ttaaagagatcaatccttggagtgatgagataaatgagtttcctgttgatgtttcaa |
19797366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 21 - 177
Target Start/End: Complemental strand, 19539835 - 19539679
Alignment:
| Q |
21 |
ggaaggataaggaaaggtgataggatttggcaaattgcatttgggtctggatttaaatgtaacactgctgtttggtgtgctttaaggaatgttgatcctg |
120 |
Q |
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||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||| |||||||||||| |
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| T |
19539835 |
ggaagaataagaaaaggtgataggatttggcaaattgcatttgggtctagatttaagtgtaacactgctgtttggtgtgcattaaagaatgttgatccaa |
19539736 |
T |
|
| Q |
121 |
ttaaggagattaatccttggagtgatgaggttcatgaatttcctgttgatgtttcaa |
177 |
Q |
| |
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|||| ||||| |||||||||||||||||| | ||| ||||||||||||||||||| |
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| T |
19539735 |
ttaaagagatcaatccttggagtgatgagataagtgagtttcctgttgatgtttcaa |
19539679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 33 - 177
Target Start/End: Complemental strand, 19671746 - 19671602
Alignment:
| Q |
33 |
aaaggtgataggatttggcaaattgcatttgggtctggatttaaatgtaacactgctgtttggtgtgctttaaggaatgttgatcctgttaaggagatta |
132 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||| |||| ||||| | |
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| T |
19671746 |
aaaggtgataggatttggcaaattgcatttgggtctggatttaagtgtaacactcctgtttggtgtgcattaaggaatgttgatccaattaaagagatca |
19671647 |
T |
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| Q |
133 |
atccttggagtgatgaggttcatgaatttcctgttgatgtttcaa |
177 |
Q |
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||||||||||||||||| | ||| |||||| |||||||||||| |
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| T |
19671646 |
atccttggagtgatgagataagtgagtttcctcttgatgtttcaa |
19671602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 172
Target Start/End: Original strand, 34053333 - 34053481
Alignment:
| Q |
24 |
aggataaggaaaggtgataggatttggcaaattgcatttgggtctggatttaaatgtaacactgctgtttggtgtgctttaaggaatgttgatcctgtta |
123 |
Q |
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||||| || ||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||| ||| |||| || |||| |||||||| | || |
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| T |
34053333 |
aggattagaaaaggtgataggacttggcaaattgcatttggttctggatttaaatgtaacagtgctgtgtggcgtgcattgaggaccgttgatccagcta |
34053432 |
T |
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| Q |
124 |
aggagattaatccttggagtgatgaggttcatgaatttcctgttgatgt |
172 |
Q |
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|||||| ||||| |||| |||||| ||||||| ||||||||| |||| |
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| T |
34053433 |
aggagaaaaatccatggatggatgagattcatgagtttcctgttcatgt |
34053481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 33 - 172
Target Start/End: Original strand, 15239643 - 15239782
Alignment:
| Q |
33 |
aaaggtgataggatttggcaaattgcatttgggtctggatttaaatgtaacactgctgtttggtgtgctttaaggaatgttgatcctgttaaggagatta |
132 |
Q |
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||||||||||| | |||||||||||||||||| ||||| ||||| ||||| | |||||||||| || || | || | || |||||| ||||||| | |
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| T |
15239643 |
aaaggtgatagaacttggcaaattgcatttggttctggttttaagtgtaatagtgctgtttggaaagcattgaagactattaatcctgcaaaggagaaga |
15239742 |
T |
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| Q |
133 |
atccttggagtgatgaggttcatgaatttcctgttgatgt |
172 |
Q |
| |
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||||||||| ||||||| ||||||| ||||||||| |||| |
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| T |
15239743 |
atccttggattgatgagattcatgagtttcctgttcatgt |
15239782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 27445001 - 27445061
Alignment:
| Q |
195 |
acttgggctgacatgatcatattgtcttgggacctgaaaatgtgctcctcctcaagatttc |
255 |
Q |
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||||||| ||||||||| ||||| ||||||||| || | |||||||||||||||| |||| |
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| T |
27445001 |
acttgggttgacatgatggtattgacttgggaccagagagtgtgctcctcctcaaggtttc |
27445061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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