View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18371_low_24 (Length: 281)
Name: NF18371_low_24
Description: NF18371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18371_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 34499139 - 34498864
Alignment:
| Q |
1 |
ttgtgaacttgtgtgattgaagtgttcacacctttgagttttttgagttactgttttatggatttgatttggaactatgatttaagctttattagtattt |
100 |
Q |
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| T |
34499139 |
ttgtgaacttgtgtgattgaagtgttcacacctttgagttttttgagttactgttttatggatgtgatttggaactatgatttaagctttattagtattt |
34499040 |
T |
|
| Q |
101 |
tacggctataaagnnnnnnngtattgtttgcaaaagtggctactactaatttgagatgatttttacttgctttccgagaccaaaccattggatcgactta |
200 |
Q |
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| T |
34499039 |
tacggctataaagtttttttgtattgtttgcaaaagtggctactactaatttgagatcatttttacttgctttccgagaccaaaccattggatcgactta |
34498940 |
T |
|
| Q |
201 |
tttgagtttatctaccggataaataccggtgagattgtttgaaaaagcttttctaaacaacttctgatgatgtccat |
277 |
Q |
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| T |
34498939 |
tttgagtttatctaccggataattaccggtgagattgtttggaaaagcttttctaaacaacttctgat-atgtccat |
34498864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 216
Target Start/End: Complemental strand, 3952207 - 3952179
Alignment:
| Q |
188 |
ttggatcgacttatttgagtttatctacc |
216 |
Q |
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| T |
3952207 |
ttggatcgacttatttgagtttatctacc |
3952179 |
T |
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