View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18371_low_27 (Length: 270)
Name: NF18371_low_27
Description: NF18371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18371_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 72 - 254
Target Start/End: Complemental strand, 43719950 - 43719768
Alignment:
| Q |
72 |
ataatatattctctgttcaagttatccaatttattgaaacgtaaaattgtcaaggatgatccagaagtggtaaattgattgtaaagtttgaagtagttga |
171 |
Q |
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| T |
43719950 |
ataatatattctctgttcaagttatccaatttattgaaacgtaaaattgtcaaggatgatccagaagtggtaaattgattgtaaagtttgaagtagttga |
43719851 |
T |
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| Q |
172 |
tgagtggataaaatttctactttgcattatttttgttctccaaatatgagtaagacgtgagggtgtattatccgtgaccataa |
254 |
Q |
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| T |
43719850 |
tgagtggataaaatttctaccttgcattatttttgttctgcaaatatgagtaagacgtgagggtgtattatccgtgaccataa |
43719768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 43721910 - 43721854
Alignment:
| Q |
16 |
acttgcaagaggtggataggttgaattatcggtgtgttgttttccatttgaatataa |
72 |
Q |
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| T |
43721910 |
acttgcaagaggtggataggttgaattatcggtgtgttgttttccatttgaatataa |
43721854 |
T |
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