View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18371_low_3 (Length: 641)
Name: NF18371_low_3
Description: NF18371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18371_low_3 |
 | |
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| [»] scaffold0602 (2 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 146 - 638
Target Start/End: Complemental strand, 8621464 - 8620972
Alignment:
| Q |
146 |
ccattacagttataattaaatgttaggttttaaagaaacttttaaaataagtttcaatttgatgaaggtttacatgtgaaaaatatctgatacattgact |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
8621464 |
ccattacagttataattaaatgttaggttttaaagaaacttttaaaataagtttcaatttgatgaaggtttacatgtgaaaaatatctgataaattgact |
8621365 |
T |
|
| Q |
246 |
cattcaattttcaatgtgaaactttcttccactgctcacacactgttttaaatcgttcgaaattgaacaatttaatacaactataattgtttggtatttc |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||| |
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|
| T |
8621364 |
cattcaattttcaatgtgaaactttcttccattgctcgcagactgttttaaatcgttcgaaattaaacaattgaatacaactataattgttcggtatttc |
8621265 |
T |
|
| Q |
346 |
attataaaacacaaaaccctaaacatgtgttcttttcaagaaaattgttatcatatgttaatatttatgatacatacctcttcaacaacgaaaagtggtt |
445 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8621264 |
attataaaatacaaagccctaaacatgtgttcttttcaagaaaattgttatcatatgttaatatttatgatacatacctcttcaacaacgaaaagtggtt |
8621165 |
T |
|
| Q |
446 |
cttgaagcagcatcagaggctcctgagttttaaatacagtcaaactaggacagcctaaaacagtcatcactcccaaagatggacatgcaagagtatattt |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8621164 |
cttgaagcagcatcagaggctcctgagttttaaatacagtcaaactaggacagcctaaaacagtcatcactcccaaagatggacatgcaagagtatattt |
8621065 |
T |
|
| Q |
546 |
tccttcataaaagcctttgagcttcggtaagtccttaaaagttagagtgttcaaggcatttaattcaaattgttgagttataaatataaattc |
638 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
8621064 |
tccttcataaaagcctttgagcttcggtaagtccttaaaagttagagtgttcaaggcattcaattcaaattgttgagttataaatataaattc |
8620972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 146 - 631
Target Start/End: Original strand, 8637586 - 8638071
Alignment:
| Q |
146 |
ccattacagttataattaaatgttaggttttaaagaaacttttaaaataagtttcaatttgatgaaggtttacatgtgaaaaatatctgatacattgact |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||| |
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|
| T |
8637586 |
ccattacagttataattaaatgttaggttttaaagaaacttttaaaataagtttcaatttgatgaagttttacatgtgaaaaatttcggatacattgact |
8637685 |
T |
|
| Q |
246 |
cattcaattttcaatgtgaaactttcttccactgctcacacactgttttaaatcgttcgaaattgaacaatttaatacaactataattgtttggtatttc |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||| |
|
|
| T |
8637686 |
cattcaattttcaatgtgaaactttcttccattgctcgcagactgttttaaatcgttcgaaattaaacaattgaatacaactataattgttcggtatttc |
8637785 |
T |
|
| Q |
346 |
attataaaacacaaaaccctaaacatgtgttcttttcaagaaaattgttatcatatgttaatatttatgatacatacctcttcaacaacgaaaagtggtt |
445 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8637786 |
attataaaatacaaagccctaaacatgtgttcttttcaagaaaattgttatcatatgttaatatttatgatacatacctcttcaacaacgaaaagtggtt |
8637885 |
T |
|
| Q |
446 |
cttgaagcagcatcagaggctcctgagttttaaatacagtcaaactaggacagcctaaaacagtcatcactcccaaagatggacatgcaagagtatattt |
545 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||| || | || |
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|
| T |
8637886 |
cttgaagcagcatcagagactcctgagttttaaatacagtcaacttagcacagcctaaaacagtcatcactctcaaagatggacatgcaagggtgtgatt |
8637985 |
T |
|
| Q |
546 |
tccttcataaaagcctttgagcttcggtaagtccttaaaagttagagtgttcaaggcatttaattcaaattgttgagttataaata |
631 |
Q |
| |
|
|||| |||||||||||||||||| ||||||| ||||||||| |||||| ||||||||||| |||||||||||| ||| |||||||| |
|
|
| T |
8637986 |
tcctccataaaagcctttgagctgcggtaaggccttaaaagatagagtcttcaaggcattcaattcaaattgtggaggtataaata |
8638071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 11 - 152
Target Start/End: Complemental strand, 8621643 - 8621502
Alignment:
| Q |
11 |
atcatcatgtctaacctctccagatgcggaatcacctaaaacatacataaagcacaatttacaaaaactgagtatttaatattaactcaataaatgttat |
110 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8621643 |
atcattatgtctaacctctccagatgcggaatcacctaaaacatacataaagcacaatttaaaaaaactgagtatttaatattaactcaatgaatgttat |
8621544 |
T |
|
| Q |
111 |
tttatcagttaaatatgtctgaaacttcttttttaccattac |
152 |
Q |
| |
|
||| ||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
8621543 |
tttttcagtcaaatatgtttgaaacttcttttttaccattac |
8621502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 11 - 152
Target Start/End: Original strand, 8637407 - 8637548
Alignment:
| Q |
11 |
atcatcatgtctaacctctccagatgcggaatcacctaaaacatacataaagcacaatttacaaaaactgagtatttaatattaactcaataaatgttat |
110 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8637407 |
atcattatgtctaacctctccagatgcggaatcacctaaaacatacataaagcacaatttaaaaaaactgagtatttaatattaactcaatgaatgttat |
8637506 |
T |
|
| Q |
111 |
tttatcagttaaatatgtctgaaacttcttttttaccattac |
152 |
Q |
| |
|
||| ||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
8637507 |
tttttcagtcaaatatgtttgaaacttcttttttaccattac |
8637548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0602 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: scaffold0602
Description:
Target: scaffold0602; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 146 - 631
Target Start/End: Original strand, 2983 - 3468
Alignment:
| Q |
146 |
ccattacagttataattaaatgttaggttttaaagaaacttttaaaataagtttcaatttgatgaaggtttacatgtgaaaaatatctgatacattgact |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||| |
|
|
| T |
2983 |
ccattacagttataattaaatgttaggttttaaagaaacttttaaaataagtttcaatttgatgaagttttacatgtgaaaaatttcggatacattgact |
3082 |
T |
|
| Q |
246 |
cattcaattttcaatgtgaaactttcttccactgctcacacactgttttaaatcgttcgaaattgaacaatttaatacaactataattgtttggtatttc |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||| |
|
|
| T |
3083 |
cattcaattttcaatgtgaaactttcttccattgctcgcagactgttttaaatcgttcgaaattaaacaattgaatacaactataattgttcggtatttc |
3182 |
T |
|
| Q |
346 |
attataaaacacaaaaccctaaacatgtgttcttttcaagaaaattgttatcatatgttaatatttatgatacatacctcttcaacaacgaaaagtggtt |
445 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3183 |
attataaaatacaaagccctaaacatgtgttcttttcaagaaaattgttatcatatgttaatatttatgatacatacctcttcaacaacgaaaagtggtt |
3282 |
T |
|
| Q |
446 |
cttgaagcagcatcagaggctcctgagttttaaatacagtcaaactaggacagcctaaaacagtcatcactcccaaagatggacatgcaagagtatattt |
545 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||| || | || |
|
|
| T |
3283 |
cttgaagcagcatcagagactcctgagttttaaatacagtcaacttagcacagcctaaaacagtcatcactctcaaagatggacatgcaagggtgtgatt |
3382 |
T |
|
| Q |
546 |
tccttcataaaagcctttgagcttcggtaagtccttaaaagttagagtgttcaaggcatttaattcaaattgttgagttataaata |
631 |
Q |
| |
|
|||| |||||||||||||||||| ||||||| ||||||||| |||||| ||||||||||| |||||||||||| ||| |||||||| |
|
|
| T |
3383 |
tcctccataaaagcctttgagctgcggtaaggccttaaaagatagagtcttcaaggcattcaattcaaattgtggaggtataaata |
3468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0602; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 11 - 152
Target Start/End: Original strand, 2804 - 2945
Alignment:
| Q |
11 |
atcatcatgtctaacctctccagatgcggaatcacctaaaacatacataaagcacaatttac-aaaaactgagtatttaatattaactcaataaatgtta |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2804 |
atcattatgtctaacctctccagatgcggaatcacctaaaacatacataaagcacaatttacaaaaaactgagtatttaatattaactcaataaatgtta |
2903 |
T |
|
| Q |
110 |
ttttatcagttaaatatgtctgaaacttcttttttaccattac |
152 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2904 |
ttttttcagttaaatatgt-tgaaacttcttttttaccattac |
2945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 37290502 - 37290554
Alignment:
| Q |
36 |
gcggaatcacctaaaacatacataaagcacaatttacaaaaactgagtattta |
88 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37290502 |
gcggaatcacctaaaacatacacaaagcacaatttacaaaaactgagtattta |
37290554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 19343726 - 19343776
Alignment:
| Q |
38 |
ggaatcacctaaaacatacataaagcacaatttacaaaaactgagtattta |
88 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| | ||| |||||| |
|
|
| T |
19343726 |
ggaatcacctaaaacaaacataaagcacaatttacaaacagtgaatattta |
19343776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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