View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18371_low_33 (Length: 242)
Name: NF18371_low_33
Description: NF18371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18371_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 4 - 226
Target Start/End: Original strand, 22039604 - 22039826
Alignment:
| Q |
4 |
agggtagtattgacccttaagctaaaaggtataccatatgagaacatagaagaagatcgtttcaacaagagtcctcaacttcttcaatacaatccagtgc |
103 |
Q |
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| T |
22039604 |
agggtagtattgacccttaagctaaaaggtataccatatgagaacatagaggaagatcgtttcaacaagagtcctcaacttcttcaatacaatccagtgc |
22039703 |
T |
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| Q |
104 |
acaagaaaactccagtgttagttcatgatggaaaacctctatgtgagtctatgatcattgttgaatacattgatgagatatggccacaataccctttgct |
203 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22039704 |
acaagaaaactccagtgttggttcatgatggaaaacctctatgtgagtctatgatcattgttgaatacattgatgagatatggccacaataccctttgct |
22039803 |
T |
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| Q |
204 |
tcctgtcgatccctttgagagag |
226 |
Q |
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||||||||||||||||||||||| |
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| T |
22039804 |
tcctgtcgatccctttgagagag |
22039826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 4e-59; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 40326141 - 40325934
Alignment:
| Q |
1 |
ttgagggtagtattgacccttaagctaaaaggtataccatatgagaacatagaagaagatcgtttcaacaagagtcctcaacttcttcaatacaatccag |
100 |
Q |
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| T |
40326141 |
ttgagggtagtatggaccttgaatctaaagggtataccatatgagaacatagaggaagatcgtttcaataaaagtcctctgcttcttcaatataacccaa |
40326042 |
T |
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| Q |
101 |
tgcacaagaaaactccagtgttagttcatgatggaaaacctctatgtgagtctatgatcattgttgaatacattgatgagatatggccacaatacccttt |
200 |
Q |
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| T |
40326041 |
tacacaagaagactccagtgttggttcatgatggaaaacccatatgcgagtcaatgatcattgttgaatacattgatgagatatggccacaaaacacatt |
40325942 |
T |
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| Q |
201 |
gcttcctg |
208 |
Q |
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|||||||| |
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| T |
40325941 |
gcttcctg |
40325934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 28 - 191
Target Start/End: Complemental strand, 40338460 - 40338297
Alignment:
| Q |
28 |
aaaggtataccatatgagaacatagaagaagatcgtttcaacaagagtcctcaacttcttcaatacaatccagtgcacaagaaaactccagtgttagttc |
127 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||| || || || || | |||||| ||||||||| | ||| |
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| T |
40338460 |
aaaggtataccatatgagaacatagaggaagatcgtttcaataagagctctcaacttcttcactataaccccgtacgcaagaatactccagtgctgattc |
40338361 |
T |
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| Q |
128 |
atgatggaaaacctctatgtgagtctatgatcattgttgaatacattgatgagatatggccaca |
191 |
Q |
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| T |
40338360 |
acgatgaaaaaccaatatgtgagtctatgatcattgttgaatacattgatgagatatggccaca |
40338297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 31 - 208
Target Start/End: Complemental strand, 40343641 - 40343464
Alignment:
| Q |
31 |
ggtataccatatgagaacatagaagaagatcgtttcaacaagagtcctcaacttcttcaatacaatccagtgcacaagaaaactccagtgttagttcatg |
130 |
Q |
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||||||||||||||||||||||| ||| |||| ||||| || ||||||| ||||||||||| || ||| | ||||||| ||||||||| || |||||| |
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| T |
40343641 |
ggtataccatatgagaacatagaggaatatcgcttcaataaaagtcctctgcttcttcaatataacccaatatacaagaagactccagtgctaattcatg |
40343542 |
T |
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| Q |
131 |
atggaaaacctctatgtgagtctatgatcattgttgaatacattgatgagatatggccacaataccctttgcttcctg |
208 |
Q |
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|||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| || | |||||||||| |
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| T |
40343541 |
atggaaaaccaatatgtgagtccatgatcattgttgaatacattgatgagatatggccacacaactcattgcttcctg |
40343464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 192
Target Start/End: Complemental strand, 40331355 - 40331167
Alignment:
| Q |
4 |
agggtagtattgacccttaagctaaaaggtataccatatgagaacatagaagaagatcgtttcaacaagagtcctcaacttcttcaatacaatccagtgc |
103 |
Q |
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||||| |||| |||||| || || || |||||||| ||||| | ||||||||||||| ||||| | || |||||||||||||||||| || ||| | | |
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| T |
40331355 |
agggtggtatggaccctaaatctgaagggtataccgtatgatagtatagaagaagatcacttcaataggactcctcaacttcttcaatataacccaatac |
40331256 |
T |
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| Q |
104 |
acaagaaaactccagtgttagttcatgatggaaaacctctatgtgagtctatgatcattgttgaatacattgatgagatatggccacaa |
192 |
Q |
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|||| |||||||||||| | ||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
40331255 |
acaaaaaaactccagtgctggttcatgatggaaaacccatatgtgagtccatgattattgttgaatacattgatgagatatggccacaa |
40331167 |
T |
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