View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18371_low_34 (Length: 236)
Name: NF18371_low_34
Description: NF18371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18371_low_34 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 28881265 - 28881490
Alignment:
| Q |
11 |
agaatatttcaaggactaaattccaaaacgaccaacatgatcaaagacttcaaagttcaagaactattttaaaatattaacaattttatgggttaaattg |
110 |
Q |
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| T |
28881265 |
agaaaatttcaaggactaaattccaaaacgaccaacatgatcaaagacttcaaagttcaagaactattttgaaatattaacaattttatgagttaaattg |
28881364 |
T |
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| Q |
111 |
acaatgtcgtacaacttcataggactaaatcaacgatttattcctgaactttatcttttttaacattagtccattttaaaatatgtttttacactacctt |
210 |
Q |
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| T |
28881365 |
acaatgttgtacagcttcataggactaaatcaacgatttattcctgaattttatcttttttaacattagtccattttaacatatgtttttacattacctt |
28881464 |
T |
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| Q |
211 |
cttaacataggcaatattgtggtgat |
236 |
Q |
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| T |
28881465 |
cttaacataggcaatattgtggtgat |
28881490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 11 - 236
Target Start/End: Original strand, 28886044 - 28886271
Alignment:
| Q |
11 |
agaatatttcaaggactaaattccaaaacgaccaacatgatcaaagacttcaaagttcaagaactattttaaaatattaacaattttatgggttaaattg |
110 |
Q |
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|||| |||||||| ||||||||||||||||| ||| ||||||||||||||||| ||||||| |||||||| |||||||||||||||||| |||||||||| |
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| T |
28886044 |
agaaaatttcaagaactaaattccaaaacgatcaatatgatcaaagacttcaatgttcaaggactattttgaaatattaacaattttataggttaaattg |
28886143 |
T |
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| Q |
111 |
acaatgtcgtacaacttcataggactaaatcaacgatttattcctgaactttatcttttttaacattagtccatttt---aaaatatgtttttacactac |
207 |
Q |
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| T |
28886144 |
acaatgtcgtacaacttcgtgggactaaatcgatgattcagtcctaaacttt-ttgtttttaactttagtccattttataataatatgtttttactctac |
28886242 |
T |
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| Q |
208 |
cttcttaacataggcaatattgtggtgat |
236 |
Q |
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| T |
28886243 |
cttctcaacatatgcaaaattttggtgat |
28886271 |
T |
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