View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18371_low_39 (Length: 211)
Name: NF18371_low_39
Description: NF18371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18371_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 12 - 196
Target Start/End: Complemental strand, 46209479 - 46209295
Alignment:
| Q |
12 |
agcagagacaacaacaaaacaaggaaaacaagcatggaagcaaagtgtgaagttagaaggcttcacataatctgcttatttagctacatgggtggttttg |
111 |
Q |
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| T |
46209479 |
agcaaagacaacaacaaaacaaggaaaacaagcatggaagcaaagtgtgaagttagaaggcttcacataatctgcttatttagctacatgggtggttttg |
46209380 |
T |
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| Q |
112 |
cagaacattatcgtctcattagtgttcttcgtctagctcaaaacgatgtttatctcaggtgaaactcatttatgttacatgttta |
196 |
Q |
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| T |
46209379 |
cagaacattatcgtctcattagtgttcttcgtctagctcaaaacgatgtttatctcaggtgaaactcatttatgttacatgttta |
46209295 |
T |
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Back To:
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Target: chr2 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 36 - 187
Target Start/End: Complemental strand, 26306181 - 26306025
Alignment:
| Q |
36 |
aaaacaagcatggaagcaaagtgtg---aagttagaaggcttcacataatctgcttatttagctacatgggtggttttgcagaacattatcgtctcatta |
132 |
Q |
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||||||||||||||| |||| ||| |||||||||||||||||||||||| ||| |||| ||||||||||| |||||||||| || ||||||| |
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| T |
26306181 |
aaaacaagcatggaaacaaaaggtggagaagttagaaggcttcacataatctacttccttagtcacatgggtggtcatgcagaacatcctcatctcattc |
26306082 |
T |
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| Q |
133 |
gtgttcttcgtctagctcaaaacgatgtttatctc--aggtgaaactcatttatgtt |
187 |
Q |
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||||||||| ||| |||| ||||| |||||||||| |||| |||||| |||||||| |
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| T |
26306081 |
gtgttcttcatcttgctcgaaacggtgtttatctcagaggtaaaactcgtttatgtt |
26306025 |
T |
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