View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18371_low_4 (Length: 617)

Name: NF18371_low_4
Description: NF18371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18371_low_4
NF18371_low_4
[»] chr6 (11 HSPs)
chr6 (15-602)||(18494911-18495508)
chr6 (14-178)||(11643754-11643919)
chr6 (14-183)||(24798800-24798969)
chr6 (47-183)||(24798625-24798761)
chr6 (57-188)||(2216799-2216930)
chr6 (60-183)||(11643973-11644095)
chr6 (46-183)||(24690355-24690496)
chr6 (14-181)||(24690536-24690691)
chr6 (46-161)||(18494756-18494869)
chr6 (61-117)||(11643898-11643954)
chr6 (101-161)||(13800048-13800108)
[»] chr2 (17 HSPs)
chr2 (14-161)||(38982734-38982882)
chr2 (16-183)||(2916378-2916545)
chr2 (14-184)||(16973063-16973234)
chr2 (14-181)||(44594415-44594583)
chr2 (46-161)||(16973274-16973389)
chr2 (46-183)||(40987657-40987794)
chr2 (25-161)||(40987834-40987971)
chr2 (14-183)||(13559480-13559648)
chr2 (14-158)||(24126107-24126245)
chr2 (46-186)||(38982554-38982694)
chr2 (46-183)||(11533654-11533792)
chr2 (14-158)||(24125836-24125975)
chr2 (46-161)||(2916587-2916702)
chr2 (91-183)||(44594248-44594341)
chr2 (39-128)||(13559359-13559448)
chr2 (116-183)||(24125670-24125737)
chr2 (61-117)||(16973213-16973269)
[»] chr1 (12 HSPs)
chr1 (14-183)||(10824546-10824716)
chr1 (14-183)||(22683141-22683311)
chr1 (14-161)||(18844481-18844629)
chr1 (46-185)||(19056148-19056287)
chr1 (17-183)||(19056330-19056498)
chr1 (46-161)||(37189558-37189673)
chr1 (46-182)||(15825731-15825865)
chr1 (58-183)||(37189368-37189492)
chr1 (72-183)||(18844684-18844796)
chr1 (55-160)||(10824391-10824496)
chr1 (46-142)||(22683351-22683447)
chr1 (61-117)||(19056292-19056348)
[»] chr4 (11 HSPs)
chr4 (14-183)||(39161288-39161457)
chr4 (65-183)||(50509357-50509475)
chr4 (46-183)||(55173463-55173600)
chr4 (46-180)||(37996068-37996202)
chr4 (18-183)||(47096800-47096964)
chr4 (46-183)||(39161497-39161634)
chr4 (39-183)||(47097001-47097144)
chr4 (61-186)||(55173331-55173457)
chr4 (35-81)||(50509301-50509348)
chr4 (134-193)||(2623449-2623508)
chr4 (98-148)||(8516859-8516909)
[»] chr8 (13 HSPs)
chr8 (24-183)||(13884489-13884649)
chr8 (46-161)||(29714752-29714867)
chr8 (14-183)||(42126382-42126553)
chr8 (46-161)||(11867892-11868007)
chr8 (14-183)||(29714542-29714712)
chr8 (43-184)||(13884695-13884836)
chr8 (46-184)||(42126594-42126732)
chr8 (46-161)||(2554060-2554175)
chr8 (107-183)||(43416263-43416339)
chr8 (39-137)||(14996661-14996761)
chr8 (14-67)||(14996575-14996629)
chr8 (61-111)||(14996614-14996664)
chr8 (20-85)||(11867779-11867846)
[»] chr3 (13 HSPs)
chr3 (46-183)||(40244625-40244763)
chr3 (14-186)||(51663247-51663420)
chr3 (46-183)||(51663460-51663597)
chr3 (14-161)||(46003425-46003573)
chr3 (14-161)||(20537948-20538097)
chr3 (46-182)||(20538144-20538280)
chr3 (46-160)||(46003271-46003385)
chr3 (46-183)||(40364041-40364178)
chr3 (61-161)||(40364183-40364282)
chr3 (122-183)||(40244874-40244935)
chr3 (184-225)||(32151274-32151315)
chr3 (61-117)||(46003390-46003446)
chr3 (101-161)||(48867469-48867529)
[»] chr7 (12 HSPs)
chr7 (46-182)||(6474281-6474418)
chr7 (22-180)||(28715645-28715804)
chr7 (21-153)||(30862403-30862537)
chr7 (46-183)||(41985910-41986047)
chr7 (14-183)||(6474458-6474627)
chr7 (46-183)||(28715852-28715989)
chr7 (14-184)||(47373461-47373633)
chr7 (46-183)||(30862218-30862355)
chr7 (39-161)||(47373665-47373787)
chr7 (130-183)||(22226666-22226719)
chr7 (114-183)||(41986186-41986255)
chr7 (37-73)||(1903935-1903971)
[»] scaffold0060 (1 HSPs)
scaffold0060 (43-183)||(22912-23052)
[»] scaffold0781 (1 HSPs)
scaffold0781 (57-188)||(5256-5387)
[»] chr5 (2 HSPs)
chr5 (14-183)||(21249362-21249532)
chr5 (46-111)||(21249572-21249637)


Alignment Details
Target: chr6 (Bit Score: 360; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 15 - 602
Target Start/End: Original strand, 18494911 - 18495508
Alignment:
Q  15 ataggggaccaaattgctatataagttaacgttttttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgat 114  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||  ||||||| || ||| | ||||||| ||| ||||||||||||||    
T  18494911 ataggggaccaaattgctacataagttaacgtttttttagagaaactaacagaaagaactaaaactaataacggatcaaaatataggggaccaaattgat 18495010  T
Q  115 acaaatcatagttaagggaccaaatttagacaatcaattaagttaagcgatcggataattgaataagccaaataaatattataagatattttagaaaatt 214  Q
    |||||| |||||||||||| |||||| | | |||||||||||||||| ||   ||| |||||||||||||||||||||||||||| ||||||| ||| ||    
T  18495011 acaaattatagttaagggatcaaattaatataatcaattaagttaagggactagatgattgaataagccaaataaatattataagttattttacaaagtt 18495110  T
Q  215 gtccttaat------tatgagaaagataaattaacaaatcgnnnnnnnnnncttaaccattttgaaaaactagtagttattttgtcttttgtgctttata 308  Q
    |||| ||||      |||||||||||||||||||||||||            ||||||||||| |||||||||| |||||||||||||||||||||||||    
T  18495111 gtccgtaataaaaagtatgagaaagataaattaacaaatctaaaaaaaa---ttaaccattttaaaaaactagtcgttattttgtcttttgtgctttata 18495207  T
Q  309 ttagtgaccaagtttcttccaaaaagtagttatggtactttcnnnnnnnnaattcttatattctgatgtatcaatccaatcttctaggacacatttggct 408  Q
    ||||||||||||||||||||||||||||||||||||||||||        ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  18495208 ttagtgaccaagtttcttccaaaaagtagttatggtactttcttttttttaattcatatattctgatgtatcaatccaatcttctaggacacatttggct 18495307  T
Q  409 tcgtctttcttttttgtgtttcctggattttccattctaaagtccattctaatctccattatgatcttcggaggctcaatcttatgtgcttgtgagttgc 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  18495308 tcgtctttcttttttgtgtttcctggattttccattctaaagtccattctaatctccattatgatcttcggaggctcaa-cttatgtgcttgtgagttgc 18495406  T
Q  509 tat--------tctgatctgctactgaagtgctcttaattttaattgtgatatcaaaattttgatcttggattatgggatgagattacatctgaactttg 600  Q
    |||        |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  18495407 tatctgatctatctgatctgcaactgaagtgctcttaattttaattgtgatatcaaaattttgatcttggattaagggatgagattacatctgaactttg 18495506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 14 - 178
Target Start/End: Complemental strand, 11643919 - 11643754
Alignment:
Q  14 cataggggaccaaattgctatataagttaacgttttttg-agagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattg 112  Q
    ||||||||||||||||| || |||||||||||||||||  ||||||||||||||| | |||||||| ||||||  || ||||||||| || |||||||||    
T  11643919 cataggggaccaaattggtacataagttaacgttttttttagagaaactaacagagaggactaaaactagtaacaaaacaaaacatagggaaccaaattg 11643820  T
Q  113 atacaaatcatagttaagggaccaaatttagacaatcaattaagttaagcgatcggataattgaat 178  Q
    |||||||| ||||||| |||| |||||| |||||||||||||| ||||| || ||| | |||||||    
T  11643819 atacaaattatagttaggggatcaaattgagacaatcaattaaattaagggaccgggtgattgaat 11643754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 14 - 183
Target Start/End: Original strand, 24798800 - 24798969
Alignment:
Q  14 cataggggaccaaattgctatataagttaacgttttttg--agagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaatt 111  Q
    |||||||||||||||||  ||| |||||||||||||||   ||| ||||||  ||||| |||||||| |||||| ||| ||||||||| |||||||||||    
T  24798800 cataggggaccaaattg--atacaagttaacgtttttttttagaaaaactactagaaaggactaaaactagtaacgaagcaaaacataggggaccaaatt 24798897  T
Q  112 gatacaaatcatagttaagggaccaaatttagacaatcaattaagttaagcgatcggataattgaataagcc 183  Q
    ||||||||| ||||||| |||| |||||| |||||||||||||| ||||| |||||| | ||||||||||||    
T  24798898 gatacaaattatagttaggggatcaaattaagacaatcaattaatttaagggatcgggtgattgaataagcc 24798969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 47 - 183
Target Start/End: Complemental strand, 24798761 - 24798625
Alignment:
Q  47 tttttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgatacaaatcatagttaagggaccaaatttagaca 146  Q
    ||||||||||||||||||||||| |||||||| |||||| ||| |||||||||  ||||||||||| ||||||| ||||| | ||||||||||| | |||    
T  24798761 tttttgagagaaactaacagaaatgactaaaactagtaacgaagcaaaacatagaggaccaaattggtacaaattatagtcaggggaccaaattgaaaca 24798662  T
Q  147 atcaattaagttaagcgatcggataattgaataagcc 183  Q
    | ||||||||||||| || || |||||||||||||||    
T  24798661 accaattaagttaagggaccgaataattgaataagcc 24798625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 57 - 188
Target Start/End: Original strand, 2216799 - 2216930
Alignment:
Q  57 aaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgatacaaatcatagttaagggaccaaatttagacaatcaattaag 156  Q
    ||||||||| ||| |||||||| || |||  || ||||||||| |||||||||||| ||||||| ||||||| ||||||||||| |||||||||||||||    
T  2216799 aaactaacataaatgactaaaactaataacaaagcaaaacataggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaag 2216898  T
Q  157 ttaagcgatcggataattgaataagccaaata 188  Q
    ||||| || ||||| |||||||||||||||||    
T  2216899 ttaagggaccggatgattgaataagccaaata 2216930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 60 - 183
Target Start/End: Original strand, 11643973 - 11644095
Alignment:
Q  60 ctaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgatacaaatcatagttaaggg-accaaatttagacaatcaattaagtt 158  Q
    ||||||||||||||||||| ||||||  ||  |||||||| |||||||||||||||||||| ||||||| ||| |||||||| |||||||||||||||||    
T  11643973 ctaacagaaaagactaaaactagtaacaaag-aaaacata-gggaccaaattgatacaaattatagttagggggaccaaattgagacaatcaattaagtt 11644070  T
Q  159 aagcgatcggataattgaataagcc 183  Q
    ||| || ||| | ||||||||||||    
T  11644071 aagggaccgggtgattgaataagcc 11644095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 46 - 183
Target Start/End: Complemental strand, 24690496 - 24690355
Alignment:
Q  46 ttttttgagagaaactaacagaaaagactaaaattagtaa----tgaatcaaaacataagggaccaaattgatacaaatcatagttaagggaccaaattt 141  Q
    |||||||||||||| ||||||||| | |||||| ||||||    |  | |||||||||  ||||||||||| ||||||| ||||| | |||||||||||     
T  24690496 ttttttgagagaaaataacagaaatggctaaaactagtaacacctagagcaaaacatagaggaccaaattggtacaaattatagtaaggggaccaaattg 24690397  T
Q  142 agacaatcaattaagttaagcgatcggataattgaataagcc 183  Q
    |||||||||||||||||||| || ||| | ||||||||||||    
T  24690396 agacaatcaattaagttaagagaccgggtgattgaataagcc 24690355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 14 - 181
Target Start/End: Original strand, 24690536 - 24690691
Alignment:
Q  14 cataggggaccaaattgctatataagttaacgtttttt-gagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattg 112  Q
    |||||| |||||||||| || ||||||||||||||||| |||||||| ||| ||||| |||||||| |||||             || ||||||||||||    
T  24690536 cataggagaccaaattggtacataagttaacgtttttttgagagaaattaatagaaaggactaaaactagta-------------taggggaccaaattg 24690622  T
Q  113 atacaaatcatagttaagggaccaaatttagacaatcaattaagttaagcgatcggataattgaataag 181  Q
     ||||||| ||||||| || |||||||| | |||||||||||||||||| |||||| | ||||||||||    
T  24690623 gtacaaattatagttagggaaccaaattaaaacaatcaattaagttaagggatcgggtgattgaataag 24690691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 161
Target Start/End: Complemental strand, 18494869 - 18494756
Alignment:
Q  46 ttttttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgatacaaatcatagttaagggaccaaatttagac 145  Q
    |||||| ||||||||||||| ||| |||||||| ||||||  || |||| |||| ||||||||| || ||||||| |||| || ||||||||||| ||||    
T  18494869 tttttttagagaaactaacaaaaaggactaaaactagtaacaaagcaaa-cataggggaccaaaatggtacaaattatagcta-gggaccaaattgagac 18494772  T
Q  146 aatcaattaagttaag 161  Q
    ||||||| ||||||||    
T  18494771 aatcaataaagttaag 18494756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 11643954 - 11643898
Alignment:
Q  61 taacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgataca 117  Q
    ||||||||| |||||||| |||||| | | ||||||||| |||||||||||| ||||    
T  11643954 taacagaaatgactaaaactagtaacggagcaaaacataggggaccaaattggtaca 11643898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 13800108 - 13800048
Alignment:
Q  101 gggaccaaattgatacaaatcatagttaagggaccaaatttagacaatcaattaagttaag 161  Q
    ||||||||||||| |||| | ||||||||||||||||| | ||| ||| || |||||||||    
T  13800108 gggaccaaattgacacaattaatagttaagggaccaaactgagaaaataaaataagttaag 13800048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 9e-50; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 14 - 161
Target Start/End: Original strand, 38982734 - 38982882
Alignment:
Q  14 cataggggaccaaattgctatataagttaacgtttt-ttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattg 112  Q
    |||| |||||||||||| || ||||||||||||||| ||||||||||||| |||||| |||||||| |||||||||| |||||||||||| |||||||||    
T  38982734 cataagggaccaaattggtacataagttaacgtttttttgagagaaactaccagaaatgactaaaactagtaatgaagcaaaacataaggaaccaaattg 38982833  T
Q  113 atacaaatcatagttaagggaccaaatttagacaatcaattaagttaag 161  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  38982834 atacaaattatagttaagggaccaaattgagacaatcaattaagttaag 38982882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 2916545 - 2916378
Alignment:
Q  16 taggggaccaaattgctatataagttaacgttttttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgata 115  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||| || ||||| ||||||  || ||||||||| |||||||||||| ||    
T  2916545 taggggaccaaattggtacataagttaacgttttttgagagaaactaacagaaaggattaaaactagtaacaaagcaaaacataggggaccaaattggta 2916446  T
Q  116 caaatcatagttaagggaccaaatttagacaatcaattaagttaagcgatcggataattgaataagcc 183  Q
    ||||| ||||||| |||| |||||| |||||||||||||||||||| |||||| | ||||||||||||    
T  2916445 caaattatagttaggggatcaaattgagacaatcaattaagttaagagatcgggtgattgaataagcc 2916378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 16973234 - 16973063
Alignment:
Q  14 cataggggaccaaattgctatataagttaacgttttt-tgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattg 112  Q
    ||||||||||||||||| || |||||||||||||||| |||||||||||||||||||  | ||||| |||||| ||| ||||||||| ||||||||||||    
T  16973234 cataggggaccaaattggtacataagttaacgtttttatgagagaaactaacagaaagaattaaaactagtaacgaagcaaaacataggggaccaaattg 16973135  T
Q  113 atacaaatcatagttaagggaccaaatttagacaatcaattaagttaagcgatcggataattgaataagcca 184  Q
     ||||||  ||||||| ||||||||||| |||||||||||||||||||| || ||| | |||||||||||||    
T  16973134 gtacaaactatagttaggggaccaaattaagacaatcaattaagttaagggaccgggtgattgaataagcca 16973063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 14 - 181
Target Start/End: Original strand, 44594415 - 44594583
Alignment:
Q  14 cataggggaccaaattgctatataagttaacgtttt-ttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattg 112  Q
    |||||||||| |||||| || ||||||| ||||||| ||||||||||||| |||||| |||||||| |||||| ||| |||||||||| |||||||||||    
T  44594415 cataggggactaaattggtacataagtttacgtttttttgagagaaactaccagaaatgactaaaactagtaacgaagcaaaacataatggaccaaattg 44594514  T
Q  113 atacaaatcatagttaagggaccaaatttagacaatcaattaagttaagcgatcggataattgaataag 181  Q
    |||||||| ||||||| ||||||||||| |||||||||||||| ||||  || ||| | ||||||||||    
T  44594515 atacaaattatagttaggggaccaaattgagacaatcaattaaattaaaggaccgggtgattgaataag 44594583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 46 - 161
Target Start/End: Original strand, 16973274 - 16973389
Alignment:
Q  46 ttttttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgatacaaatcatagttaagggaccaaatttagac 145  Q
    |||||||||||||||| ||||||| |||||||| |||||||| | |||||||||  |||||||||||| |||||| ||||||| ||||||||||| ||||    
T  16973274 ttttttgagagaaactgacagaaatgactaaaactagtaatggagcaaaacatagaggaccaaattgacacaaattatagttaggggaccaaattgagac 16973373  T
Q  146 aatcaattaagttaag 161  Q
    ||||||||||||||||    
T  16973374 aatcaattaagttaag 16973389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 46 - 183
Target Start/End: Complemental strand, 40987794 - 40987657
Alignment:
Q  46 ttttttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgatacaaatcatagttaagggaccaaatttagac 145  Q
    |||||| ||||||||||||| |||||||||||| ||||||  |||||||||||| | ||| |||||| ||||||| ||||||| || |||||||| ||||    
T  40987794 tttttttagagaaactaacataaaagactaaaactagtaacaaatcaaaacatatgagactaaattggtacaaattatagttagggaaccaaattgagac 40987695  T
Q  146 aatcaattaagttaagcgatcggataattgaataagcc 183  Q
    |||||||||||||||| || ||||| ||| ||||||||    
T  40987694 aatcaattaagttaagggaccggatgattaaataagcc 40987657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 25 - 161
Target Start/End: Original strand, 40987834 - 40987971
Alignment:
Q  25 aaattgctatataagttaacg-ttttttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgatacaaatcat 123  Q
    |||||| || ||||||||||| |||||||||||||||||||||||| |||||||||||| |||  | ||||| ||| ||||||||||| |||||||| ||    
T  40987834 aaattgatacataagttaacggttttttgagagaaactaacagaaatgactaaaattagcaatagagcaaaatataggggaccaaattaatacaaattat 40987933  T
Q  124 agttaagggaccaaatttagacaatcaattaagttaag 161  Q
    |||||  ||| |||||| ||||||| ||||||||||||    
T  40987934 agttagaggatcaaattgagacaattaattaagttaag 40987971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 14 - 183
Target Start/End: Original strand, 13559480 - 13559648
Alignment:
Q  14 cataggggaccaaattgctatataagttaacgttttttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattga 113  Q
    ||||| ||||||||||  || ||| ||||||||||||  ||||||||||||| ||| |||||||  ||||||   | |||| || |||||||||| ||||    
T  13559480 catagaggaccaaattaatacataggttaacgtttttctagagaaactaacataaatgactaaatctagtaacagagcaaagcacaagggaccaa-ttga 13559578  T
Q  114 tacaaatcatagttaagggaccaaatttagacaatcaattaagttaagcgatcggataattgaataagcc 183  Q
    ||||||| ||||||| || |||||||| | |||||||||||||||||| || ||||| ||||||||||||    
T  13559579 tacaaattatagttagggaaccaaattgaaacaatcaattaagttaagggaccggatgattgaataagcc 13559648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 14 - 158
Target Start/End: Original strand, 24126107 - 24126245
Alignment:
Q  14 cataggggaccaaattgctatataagttaacgttttttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattga 113  Q
    ||||| ||||||||||| || ||||||||| ||||||| ||||||||||||| ||| |||||||| |||      | ||||||||||||||||||||||     
T  24126107 catagtggaccaaattgatacataagttaatgtttttttagagaaactaacataaaggactaaaactag------agcaaaacataagggaccaaattgg 24126200  T
Q  114 tacaaatcatagttaagggaccaaatttagacaatcaattaagtt 158  Q
    ||||||| ||||||| | ||||||||| ||| |||||||||||||    
T  24126201 tacaaattatagttaggagaccaaattgagaaaatcaattaagtt 24126245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 46 - 186
Target Start/End: Complemental strand, 38982694 - 38982554
Alignment:
Q  46 ttttttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgatacaaatcatagttaagggaccaaatttagac 145  Q
    ||||||||||| |||||| ||||| |||||||| ||| || ||| ||||||||||  |||||||||| ||||||| ||||||| ||  ||||||| ||||    
T  38982694 ttttttgagagtaactaatagaaaggactaaaactagcaacgaagcaaaacataaatgaccaaattggtacaaattatagttagggagccaaattgagac 38982595  T
Q  146 aatcaattaagttaagcgatcggataattgaataagccaaa 186  Q
    |||||||||||||||  |||||| | ||||| |||||||||    
T  38982594 aatcaattaagttaaaggatcgggtgattgattaagccaaa 38982554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 46 - 183
Target Start/End: Original strand, 11533654 - 11533792
Alignment:
Q  46 ttttttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataaggg-accaaattgatacaaatcatagttaagggaccaaatttaga 144  Q
    |||||| ||||| ||||| ||||| |||||||| ||||||| || ||||||||| ||| ||||||||| ||||||| ||||||  ||||||||||| |||    
T  11533654 tttttttagagacactaatagaaatgactaaaactagtaataaagcaaaacatagggggaccaaattggtacaaattatagttgggggaccaaattgaga 11533753  T
Q  145 caatcaattaagttaagcgatcggataattgaataagcc 183  Q
    |||||| |||||||||| || | ||| ||||||||||||    
T  11533754 caatcacttaagttaagagacctgatgattgaataagcc 11533792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 14 - 158
Target Start/End: Original strand, 24125836 - 24125975
Alignment:
Q  14 cataggggaccaaattgctatataagttaacgttttttg-agagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattg 112  Q
    ||||||||||||||||| || ||||||||| |||||||  |||||||||||||||||  ||||||| |||      | ||||||||||||||||||||||    
T  24125836 cataggggaccaaattgatacataagttaatgttttttttagagaaactaacagaaagaactaaaactag------agcaaaacataagggaccaaattg 24125929  T
Q  113 atacaaatcatagttaagggaccaaatttagacaatcaattaagtt 158  Q
     ||||||| ||||||| | ||||||||| ||| ||| |||||||||    
T  24125930 gtacaaattatagttaggagaccaaattgagaaaattaattaagtt 24125975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 46 - 161
Target Start/End: Original strand, 2916587 - 2916702
Alignment:
Q  46 ttttttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgatacaaatcatagttaagggaccaaatttagac 145  Q
    |||||||||||||||||||||||| ||| |||| ||||||   | ||||| |||  ||| ||| ||| ||||||| ||||||| ||||||||||| ||||    
T  2916587 ttttttgagagaaactaacagaaaggaccaaaactagtaacagagcaaaatatagaggatcaagttggtacaaataatagttaggggaccaaattgagac 2916686  T
Q  146 aatcaattaagttaag 161  Q
    ||||||||||||||||    
T  2916687 aatcaattaagttaag 2916702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 91 - 183
Target Start/End: Complemental strand, 44594341 - 44594248
Alignment:
Q  91 caaaacataagggaccaaattgatacaaatcatagttaaggg-accaaatttagacaatcaattaagttaagcgatcggataattgaataagcc 183  Q
    |||||||||  ||||||||||||||||||| ||||||| ||  |||||||| |||||||||||||||||||| || ||| | ||||||||||||    
T  44594341 caaaacatagaggaccaaattgatacaaattatagttagggacaccaaattgagacaatcaattaagttaagggaccgggtgattgaataagcc 44594248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 13559448 - 13559359
Alignment:
Q  39 gttaacgttttttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgatacaaatcatagtta 128  Q
    ||||||||||||| ||||||||||||||||| |||||||| || |||  || ||||| ||| | ||||||||||| |||||| |||||||    
T  13559448 gttaacgtttttttagagaaactaacagaaatgactaaaactaataacaaaacaaaatatatgagaccaaattgaaacaaattatagtta 13559359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 183
Target Start/End: Complemental strand, 24125737 - 24125670
Alignment:
Q  116 caaatcatagttaagggaccaaatttagacaatcaattaagttaagcgatcggataattgaataagcc 183  Q
    ||||| ||||||| |||| |||||| |||||||||||||||||||| || ||| | | ||||||||||    
T  24125737 caaattatagttaggggatcaaattgagacaatcaattaagttaagggaccggttgagtgaataagcc 24125670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 16973269 - 16973213
Alignment:
Q  61 taacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgataca 117  Q
    ||||||||| |||||||| |||||| | | ||||||||| |||||||||||| ||||    
T  16973269 taacagaaaggactaaaactagtaacggagcaaaacataggggaccaaattggtaca 16973213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 14 - 183
Target Start/End: Original strand, 10824546 - 10824716
Alignment:
Q  14 cataggggaccaaattgctatataagttaacgtttt-ttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattg 112  Q
    ||||||||| ||||||| || ||||||||||||||| |||||||||||||  ||||| |||||||| |||||| ||| ||||||||| ||||||||||||    
T  10824546 cataggggatcaaattggtacataagttaacgtttttttgagagaaactactagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattg 10824645  T
Q  113 atacaaatcatagttaagggaccaaatttagacaatcaattaagttaagcgatcggataattgaataagcc 183  Q
    |||||||| ||||||| ||||||||||| |||||||||||||||||||| || ||||| ||||||||||||    
T  10824646 atacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccggatgattgaataagcc 10824716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 14 - 183
Target Start/End: Complemental strand, 22683311 - 22683141
Alignment:
Q  14 cataggggaccaaattgctatataagttaacgtttttt-gagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattg 112  Q
    ||||||||||||||||| || ||||||||||||||||| |||||||||||||||||| |||||||| ||||||  || ||||||||| ||||||||||||    
T  22683311 cataggggaccaaattggtacataagttaacgtttttttgagagaaactaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattg 22683212  T
Q  113 atacaaatcatagttaagggaccaaatttagacaatcaattaagttaagcgatcggataattgaataagcc 183  Q
    |||||||| ||||||| ||||||||||| |||||||||||||||||||  || ||| | ||||||||||||    
T  22683211 atacaaattatagttaggggaccaaattgagacaatcaattaagttaaaggagcgggtgattgaataagcc 22683141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 14 - 161
Target Start/End: Complemental strand, 18844629 - 18844481
Alignment:
Q  14 cataggggaccaaattgctatataagttaacgtttttt-gagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattg 112  Q
    |||||||||| |||||| || ||||||| ||||||||| ||||||||||| |||||| |||||||| |||||| ||| ||||||||| ||||||||||||    
T  18844629 cataggggactaaattggtacataagtttacgtttttttgagagaaactaccagaaatgactaaaactagtaacgaagcaaaacataggggaccaaattg 18844530  T
Q  113 atacaaatcatagttaagggaccaaatttagacaatcaattaagttaag 161  Q
    |||||||| ||||||| ||||||||||| ||| ||||||||||||||||    
T  18844529 atacaaattatagttaggggaccaaattgagataatcaattaagttaag 18844481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 46 - 185
Target Start/End: Complemental strand, 19056287 - 19056148
Alignment:
Q  46 ttttttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgatacaaatcatagttaagggaccaaatttagac 145  Q
    ||||||||||||||||||||||||||||||||| ||||||  || ||||| ||| |||||||||||||||||||| ||| ||| ||||||||||| | ||    
T  19056287 ttttttgagagaaactaacagaaaagactaaaactagtaacaaagcaaaatataggggaccaaattgatacaaattataattaggggaccaaattaatac 19056188  T
Q  146 aatcaattaagttaagcgatcggataattgaataagccaa 185  Q
    |||||||||||||||| |||| | | ||||||||||||||    
T  19056187 aatcaattaagttaagggatcaggtgattgaataagccaa 19056148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 19056330 - 19056498
Alignment:
Q  17 aggggaccaaattgctatataagttaacgtttt--ttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgat 114  Q
    |||||||||||||| || |||||||||||||||  |||||||||||| ||||||| |||||||| ||||||  || ||||||||| |  ||||||||| |    
T  19056330 aggggaccaaattggtacataagttaacgttttttttgagagaaactgacagaaatgactaaaactagtaacaaagcaaaacataggataccaaattggt 19056429  T
Q  115 acaaatcatagttaagggaccaaatttagacaatcaattaagttaagcgatcggataattgaataagcc 183  Q
    ||| || ||||||| ||||||||||| | |||||||||||||||||| || ||||| ||||||||||||    
T  19056430 acagattatagttaggggaccaaattaaaacaatcaattaagttaagggaccggatgattgaataagcc 19056498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 46 - 161
Target Start/End: Original strand, 37189558 - 37189673
Alignment:
Q  46 ttttttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgatacaaatcatagttaagggaccaaatttagac 145  Q
    |||||| |||||||||| |||||| |||||||| |||||| ||| ||||||||| |||||||||||| ||||||| |||| || ||||||||||| ||||    
T  37189558 tttttttagagaaactaccagaaatgactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagataggggaccaaattgagac 37189657  T
Q  146 aatcaattaagttaag 161  Q
    ||||||||||||||||    
T  37189658 aatcaattaagttaag 37189673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 46 - 182
Target Start/End: Original strand, 15825731 - 15825865
Alignment:
Q  46 ttttttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgatacaaatcatagttaagggaccaaatttagac 145  Q
    |||||||||||||||||| | ||| |||||||| || |||  || ||||||||| |||||||||||| ||||||| |||||||  |||||||||| ||||    
T  15825731 ttttttgagagaaactaataaaaaggactaaaactaataacaaagcaaaacataggggaccaaattggtacaaattatagtta--ggaccaaattgagac 15825828  T
Q  146 aatcaattaagttaagcgatcggataattgaataagc 182  Q
    |||||||||||||||| || ||| | |||||||||||    
T  15825829 aatcaattaagttaagagaccgggtgattgaataagc 15825865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 58 - 183
Target Start/End: Complemental strand, 37189492 - 37189368
Alignment:
Q  58 aactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgatacaaatcatagttaagggaccaaatttagacaatcaattaagt 157  Q
    |||||||||||| |||||||| |||||| | | |||||||||  ||||||||||| ||||||| ||||||| | ||||||||| ||||||||||||||||    
T  37189492 aactaacagaaaggactaaaactagtaacggagcaaaacatagaggaccaaattggtacaaattatagttatgagaccaaattgagacaatcaattaagt 37189393  T
Q  158 taagcgatcggataattgaataagcc 183  Q
    |||| || ||| | ||||||||||||    
T  37189392 taag-gaccgggtgattgaataagcc 37189368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 18844684 - 18844796
Alignment:
Q  72 actaaaattagtaatgaatcaaaacataagggaccaaattgatacaaatcatagttaaggg-accaaatttagacaatcaattaagttaagcgatcggat 170  Q
    ||||||| |||||| | | |||||||||  ||||||||||||||||||| ||||||| ||  |||||||| |||||||||||||||||||| |||||| |    
T  18844684 actaaaactagtaacggagcaaaacatagaggaccaaattgatacaaattatagttagggacaccaaattgagacaatcaattaagttaagggatcgggt 18844783  T
Q  171 aattgaataagcc 183  Q
     ||||||||||||    
T  18844784 gattgaataagcc 18844796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 55 - 160
Target Start/End: Complemental strand, 10824496 - 10824391
Alignment:
Q  55 agaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgatacaaatcatagttaagggaccaaatttagacaatcaatta 154  Q
    ||||||||||||||| |||||||| |||||| | | |||||||||  ||||||||||||||||||| ||| ||| |||||||||||   | |||||||||    
T  10824496 agaaactaacagaaaggactaaaactagtaacggagcaaaacatagaggaccaaattgatacaaattataattaggggaccaaattgcaataatcaatta 10824397  T
Q  155 agttaa 160  Q
    ||||||    
T  10824396 agttaa 10824391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 46 - 142
Target Start/End: Original strand, 22683351 - 22683447
Alignment:
Q  46 ttttttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgatacaaatcatagttaagggaccaaattta 142  Q
    |||||||||||||||||| ||||| |||||||| |||||| | | |||||||||  ||||||||||| ||||||| | ||||| |||||||||||||    
T  22683351 ttttttgagagaaactaagagaaaggactaaaactagtaacggagcaaaacatagaggaccaaattggtacaaataaaagttaggggaccaaattta 22683447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 19056292 - 19056348
Alignment:
Q  61 taacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgataca 117  Q
    |||||||||||||| ||| |||||| ||| ||||||| | |||||||||||| ||||    
T  19056292 taacagaaaagacttaaactagtaacgaagcaaaacacaggggaccaaattggtaca 19056348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 14 - 183
Target Start/End: Complemental strand, 39161457 - 39161288
Alignment:
Q  14 cataggggaccaaattgctatataagttaacgttttttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattga 113  Q
    |||| |||||||||||| || ||||||||| |||||||||||||||||  |||||| |||||||| |||||| ||| ||||||||| ||||||||||||     
T  39161457 catatgggaccaaattggtacataagttaatgttttttgagagaaactttcagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattgg 39161358  T
Q  114 tacaaatcatagttaagggaccaaatttagacaatcaattaagttaagcgatcggataattgaataagcc 183  Q
    ||||||| ||||||| ||||||||||| ||||| |||||||||||||  |||||| | ||||||||||||    
T  39161357 tacaaattatagttaggggaccaaattaagacattcaattaagttaaaggatcgggtgattgaataagcc 39161288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 65 - 183
Target Start/End: Original strand, 50509357 - 50509475
Alignment:
Q  65 agaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgatacaaatcatagttaagggaccaaatttagacaatcaattaagttaagcga 164  Q
    |||||||||||||||||||||  || ||||||||| |||||||||||| ||||||| ||||||| ||||||||||| |||||||||||||||||||| ||    
T  50509357 agaaaagactaaaattagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaaggga 50509456  T
Q  165 tcggataattgaataagcc 183  Q
    || ||| ||||||||||||    
T  50509457 tcagatgattgaataagcc 50509475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 46 - 183
Target Start/End: Original strand, 55173463 - 55173600
Alignment:
Q  46 ttttttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgatacaaatcatagttaagggaccaaatttagac 145  Q
    ||||||||||||||||| || ||||||||||||  |||||  || |||| |||| |||||||||||| ||||||| ||||||| | || |||||| ||||    
T  55173463 ttttttgagagaaactagcaaaaaagactaaaacaagtaacaaagcaaagcataggggaccaaattggtacaaattatagttaggagatcaaattgagac 55173562  T
Q  146 aatcaattaagttaagcgatcggataattgaataagcc 183  Q
    |||||||||||||||| || ||| | ||||||||||||    
T  55173563 aatcaattaagttaagggaccgggtgattgaataagcc 55173600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 46 - 180
Target Start/End: Complemental strand, 37996202 - 37996068
Alignment:
Q  46 ttttttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgatacaaatcatagttaagggaccaaatttagac 145  Q
    |||||| ||||||||||| | |||||||||||| || |||  || ||||||||| |||||||||||||||||||| ||||||||||||||||||| | ||    
T  37996202 tttttttagagaaactaataaaaaagactaaaactaataacaaagcaaaacataggggaccaaattgatacaaattatagttaagggaccaaattgaaac 37996103  T
Q  146 aatcaattaagttaagcgatcggataattgaataa 180  Q
    ||||| || | ||||| |||| | | |||||||||    
T  37996102 aatcattttaattaagggatcaggtgattgaataa 37996068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 47096964 - 47096800
Alignment:
Q  18 ggggaccaaattgctatataagttaacgttttttg-agagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgatac 116  Q
    ||||||||||||| || ||||||||| |||||||| |||||||| |||| ||| ||||||||  ||||| ||| ||||||||| ||| | |||||| |||    
T  47096964 ggggaccaaattggtacataagttaaagttttttgtagagaaacaaacataaaggactaaaacaagtaacgaagcaaaacatagggggc-aaattggtac 47096866  T
Q  117 aaatcatagttaagggaccaaatttagacaatcaattaagttaagcgatcggataattgaataagcc 183  Q
    |||| || |||| ||||||||||| ||| |||||||||||||||| |||| | | ||||||||||||    
T  47096865 aaattat-gttaggggaccaaattgagataatcaattaagttaagggatcaggtgattgaataagcc 47096800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 46 - 183
Target Start/End: Original strand, 39161497 - 39161634
Alignment:
Q  46 ttttttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgatacaaatcatagttaagggaccaaatttagac 145  Q
    ||||| |||||||||||||||||| |||||||| || ||| | | |||||||||  |||| |||||| ||||||| ||||||| ||||||||||| | ||    
T  39161497 tttttcgagagaaactaacagaaaggactaaaactaataacggagcaaaacatagaggactaaattggtacaaattatagttaggggaccaaattaaaac 39161596  T
Q  146 aatcaattaagttaagcgatcggataattgaataagcc 183  Q
    ||||||||||||||||  | |||||  |||||||||||    
T  39161597 aatcaattaagttaaggaaccggatggttgaataagcc 39161634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 39 - 183
Target Start/End: Original strand, 47097001 - 47097144
Alignment:
Q  39 gttaacgtttttt--gagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgatacaaatcatagttaagggacca 136  Q
    |||||||||||||  |||||||||||||| ||| |||||||| |||||| |   |||||||||   || ||||||| ||||||| |||||||  |||| |    
T  47097001 gttaacgtttttttggagagaaactaacaaaaatgactaaaactagtaacggggcaaaacata---gatcaaattggtacaaattatagttagaggacta 47097097  T
Q  137 aatttagacaatcaattaagttaagcgatcggataattgaataagcc 183  Q
    |||| |||||||||||||||||||| |||||||| ||||||||||||    
T  47097098 aattgagacaatcaattaagttaagagatcggatgattgaataagcc 47097144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 61 - 186
Target Start/End: Complemental strand, 55173457 - 55173331
Alignment:
Q  61 taacagaaaagactaaaattagtaatgaatcaaaacataaggg-accaaattgatacaaatcatagttaagggaccaaatttagacaatcaattaagtta 159  Q
    ||||||||| |||||||| |||||| | | ||||| ||| ||| |||||||| |||||||| ||||||| ||||||||||| ||||||||||||||||||    
T  55173457 taacagaaaggactaaaactagtaacggagcaaaatatagggggaccaaattaatacaaattatagttaggggaccaaattaagacaatcaattaagtta 55173358  T
Q  160 agcgatcggataattgaataagccaaa 186  Q
    ||  | ||||| || ||||||||||||    
T  55173357 aggaaccggatgatcgaataagccaaa 55173331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 50509348 - 50509301
Alignment:
Q  35 ataagttaacgtttttt-gagagaaactaacagaaaagactaaaatta 81  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||    
T  50509348 ataagttaacgtttttttgaaagaaactaacagaaaagactaaaatta 50509301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 193
Target Start/End: Original strand, 2623449 - 2623508
Alignment:
Q  134 ccaaatttagacaatcaattaagttaagcgatcggataattgaataagccaaataaatat 193  Q
    ||||||| |||||||||||||||||||| || ||  | ||||||||||||||| ||||||    
T  2623449 ccaaattgagacaatcaattaagttaagggaccgagtgattgaataagccaaaaaaatat 2623508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 8516859 - 8516909
Alignment:
Q  98 taagggaccaaattgatacaaatcatagttaagggaccaaatttagacaat 148  Q
    |||||||||||||||| |||| | | ||||||||||||||||| |||||||    
T  8516859 taagggaccaaattgagacaatttaaagttaagggaccaaattgagacaat 8516909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 1e-42; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 24 - 183
Target Start/End: Complemental strand, 13884649 - 13884489
Alignment:
Q  24 caaattgctatataagttaacgtttttt-gagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgatacaaatca 122  Q
    ||||||| || ||||||||||||||||| ||||||||||| ||||||||||||||| |||||| ||| ||||||||| ||| |||||||| ||||||| |    
T  13884649 caaattggtacataagttaacgtttttttgagagaaactaccagaaaagactaaaactagtaacgaagcaaaacatagggggccaaattggtacaaatta 13884550  T
Q  123 tagttaagggaccaaatttagacaatcaattaagttaagcgatcggataattgaataagcc 183  Q
    |||||| ||||||||||| |||||||||||||||||||| || ||| | ||||||||||||    
T  13884549 tagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataagcc 13884489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 46 - 161
Target Start/End: Original strand, 29714752 - 29714867
Alignment:
Q  46 ttttttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgatacaaatcatagttaagggaccaaatttagac 145  Q
    |||||||||||||||| ||| ||| |||||||| |||||||||| |||||||||  ||||||||||||||||||| ||||||||||||||||||| | ||    
T  29714752 ttttttgagagaaactgacataaatgactaaaactagtaatgaagcaaaacatagaggaccaaattgatacaaattatagttaagggaccaaattaaaac 29714851  T
Q  146 aatcaattaagttaag 161  Q
    ||||||||||||||||    
T  29714852 aatcaattaagttaag 29714867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 14 - 183
Target Start/End: Complemental strand, 42126553 - 42126382
Alignment:
Q  14 cataggggaccaaattgctatataagttaacgttttttg--agagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaatt 111  Q
    ||||||||||||||||| || |||||||||||||||||   |||||||||| |||||| |||||||| |||||  ||| ||||||||| ||| |||||||    
T  42126553 cataggggaccaaattgatacataagttaacgtttttttgtagagaaactaccagaaaggactaaaactagtagcgaagcaaaacatagggggccaaatt 42126454  T
Q  112 gatacaaatcatagttaagggaccaaatttagacaatcaattaagttaagcgatcggataattgaataagcc 183  Q
    ||||||||| |||||||  | | |||||| ||||||| |||||||||||| || ||| | ||||||||||||    
T  42126453 gatacaaattatagttagagaatcaaattgagacaattaattaagttaagggaccgggtgattgaataagcc 42126382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 46 - 161
Target Start/End: Original strand, 11867892 - 11868007
Alignment:
Q  46 ttttttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgatacaaatcatagttaagggaccaaatttagac 145  Q
    |||||||||||||||||||| ||| |||||||| |||| |  ||||||||||||  ||||||||||||||||||| |||||||||| |||||||| ||||    
T  11867892 ttttttgagagaaactaacataaaggactaaaactagtgacaaatcaaaacatagaggaccaaattgatacaaattatagttaaggaaccaaattgagac 11867991  T
Q  146 aatcaattaagttaag 161  Q
    ||||||||||||||||    
T  11867992 aatcaattaagttaag 11868007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 14 - 183
Target Start/End: Complemental strand, 29714712 - 29714542
Alignment:
Q  14 cataggggaccaaattgctatataagttaacgtttttt-gagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattg 112  Q
    |||||| |||||||||| || ||||||||||||||||  |||||||||||||||||| || ||||  ||||||  || ||||| ||| ||||||||||||    
T  29714712 cataggagaccaaattggtacataagttaacgtttttacgagagaaactaacagaaatgattaaagctagtaacaaagcaaaatataggggaccaaattg 29714613  T
Q  113 atacaaatcatagttaagggaccaaatttagacaatcaattaagttaagcgatcggataattgaataagcc 183  Q
     ||||||  ||||||  ||||||||||| |||||||||||||||||||| || ||| | ||||||||||||    
T  29714612 gtacaaactatagtttggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataagcc 29714542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 43 - 184
Target Start/End: Original strand, 13884695 - 13884836
Alignment:
Q  43 acgttttttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgatacaaatcatagttaagggaccaaattta 142  Q
    |||||||||| |||||||||||| ||| ||||||||  ||||| ||| |||||||||  ||||||||||| ||||||| ||||||| ||||| ||||| |    
T  13884695 acgttttttgtgagaaactaacaaaaaggactaaaaccagtaacgaagcaaaacatagaggaccaaattggtacaaattatagttaggggactaaattga 13884794  T
Q  143 gacaatcaattaagttaagcgatcggataattgaataagcca 184  Q
    ||||||||||||||||||| || ||| | |||||||||||||    
T  13884795 gacaatcaattaagttaagggaccgggtgattgaataagcca 13884836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 46 - 184
Target Start/End: Original strand, 42126594 - 42126732
Alignment:
Q  46 ttttttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgatacaaatcatagttaagggaccaaatttagac 145  Q
    |||||| ||||||||||||||||| ||||||||||||| |   | |||||| ||  ||||||||||| ||||||| ||||||| |||| |||||| |||     
T  42126594 tttttttagagaaactaacagaaatgactaaaattagtgacagagcaaaacttagaggaccaaattggtacaaattatagttaggggatcaaattgagat 42126693  T
Q  146 aatcaattaagttaagcgatcggataattgaataagcca 184  Q
    |||||||||||||||| || ||| | |||||||||||||    
T  42126694 aatcaattaagttaagggaccgggtgattgaataagcca 42126732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 46 - 161
Target Start/End: Original strand, 2554060 - 2554175
Alignment:
Q  46 ttttttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgatacaaatcatagttaagggaccaaatttagac 145  Q
    ||||||||||||||||||||||||  |||||||  |||||  || ||||||||| | ||||||||||  |||||| ||||||| |||| |||||| ||||    
T  2554060 ttttttgagagaaactaacagaaagaactaaaacaagtaacaaagcaaaacataggagaccaaattggaacaaattatagttaggggatcaaattgagac 2554159  T
Q  146 aatcaattaagttaag 161  Q
    ||||||||||||||||    
T  2554160 aatcaattaagttaag 2554175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 107 - 183
Target Start/End: Complemental strand, 43416339 - 43416263
Alignment:
Q  107 aaattgatacaaatcatagttaagggaccaaatttagacaatcaattaagttaagcgatcggataattgaataagcc 183  Q
    |||||||||||||| ||||||| ||||  ||||| |||||||||||||||||||| || || || ||||||||||||    
T  43416339 aaattgatacaaattatagttaggggattaaattaagacaatcaattaagttaagagaccgaatgattgaataagcc 43416263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 137
Target Start/End: Original strand, 14996661 - 14996761
Alignment:
Q  39 gttaacgt-tttttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacata-agggaccaaattgatacaaatcatagttaagggacca 136  Q
    |||||||| ||||||| ||||||||||||||| |||||||| ||||||  || |||||||||  |||| ||||||| ||||||| ||| ||| |||||||    
T  14996661 gttaacgtgtttttgatagaaactaacagaaaggactaaaactagtaacaaagcaaaacatagggggatcaaattggtacaaattataattaggggacca 14996760  T
Q  137 a 137  Q
    |    
T  14996761 a 14996761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 14996629 - 14996575
Alignment:
Q  14 cataggggaccaaattgctatataagttaacgtt-ttttgagagaaactaacaga 67  Q
    ||||||||||||||||  || ||||||||||||| ||||||||||||||||||||    
T  14996629 cataggggaccaaattagtacataagttaacgtttttttgagagaaactaacaga 14996575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 14996664 - 14996614
Alignment:
Q  61 taacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaatt 111  Q
    |||||||||||||||||| |||||| ||| ||||||||| |||||||||||    
T  14996664 taacagaaaagactaaaactagtaacgaagcaaaacataggggaccaaatt 14996614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 11867846 - 11867779
Alignment:
Q  20 ggaccaaattgctatataagttaacgtttttt--gagagaaactaacagaaaagactaaaattagtaa 85  Q
    |||| |||||| || |||||||||||||||||  ||||||||||| ||||||||| ||||| ||||||    
T  11867846 ggactaaattggtaaataagttaacgttttttttgagagaaactatcagaaaagattaaaactagtaa 11867779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 5e-39; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 46 - 183
Target Start/End: Complemental strand, 40244763 - 40244625
Alignment:
Q  46 ttttttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataaggga-ccaaattgatacaaatcatagttaagggaccaaatttaga 144  Q
    |||||| ||||||||||||||||| |||||||| ||||||  || ||||||||| |||| |||||||| ||||||| ||||||||||||||||||| |||    
T  40244763 tttttttagagaaactaacagaaatgactaaaactagtaacaaagcaaaacataggggaaccaaattggtacaaattatagttaagggaccaaattgaga 40244664  T
Q  145 caatcaattaagttaagcgatcggataattgaataagcc 183  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  40244663 caatcaattaagttaagggatcggatgattgaataagcc 40244625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 14 - 186
Target Start/End: Complemental strand, 51663420 - 51663247
Alignment:
Q  14 cataggggaccaaattgctatataagttaacgtttttt-gagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattg 112  Q
    ||||||||||||||||  || ||||||||||||||||| ||||||||||| |||||| |||||||| |||||| ||| ||||||||| ||||| ||||||    
T  51663420 cataggggaccaaattagtacataagttaacgtttttttgagagaaactaccagaaatgactaaaactagtaacgaagcaaaacataggggactaaattg 51663321  T
Q  113 atacaaatcatagttaagggaccaaatttagacaatcaattaagttaagcgatcggataattgaataagccaaa 186  Q
    |||||||| |||||||  |||||| ||| | |||||||||||||||||| || ||| | ||| |||||||||||    
T  51663320 atacaaattatagttagtggaccatattaaaacaatcaattaagttaagagaccgggtgattaaataagccaaa 51663247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 46 - 183
Target Start/End: Original strand, 51663460 - 51663597
Alignment:
Q  46 ttttttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgatacaaatcatagttaagggaccaaatttagac 145  Q
    |||||||||||||||||||||||| |||||||| ||||||   | |||||||||  ||||||||||| ||||||| ||||||| ||||||||||| ||||    
T  51663460 ttttttgagagaaactaacagaaatgactaaaactagtaacatagcaaaacatagaggaccaaattgctacaaattatagttaggggaccaaattgagac 51663559  T
Q  146 aatcaattaagttaagcgatcggataattgaataagcc 183  Q
    |||||||||||||||| || ||||| ||||||||||||    
T  51663560 aatcaattaagttaagggaccggatgattgaataagcc 51663597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 14 - 161
Target Start/End: Original strand, 46003425 - 46003573
Alignment:
Q  14 cataggggaccaaattgctatataagttaacgttttttg-agagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattg 112  Q
    ||||| ||||||||||| || |||||||||||||||||  |||||||||| |||||| |||||||| |||||||||| ||||||| | |||| |||||||    
T  46003425 catagaggaccaaattggtacataagttaacgttttttttagagaaactaccagaaaggactaaaactagtaatgaagcaaaacaaaggggatcaaattg 46003524  T
Q  113 atacaaatcatagttaagggaccaaatttagacaatcaattaagttaag 161  Q
     |||||||  |||||| ||||||||||| ||||||||||||||||||||    
T  46003525 gtacaaattttagttaggggaccaaattgagacaatcaattaagttaag 46003573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 14 - 161
Target Start/End: Complemental strand, 20538097 - 20537948
Alignment:
Q  14 cataggggaccaaattgctatataagttaacgttttttg--agagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaatt 111  Q
    ||||||||||||||||| || |||| ||||||||||||   ||||||||||| ||||| |||||||| |||||||||| ||||||||| |||||||||||    
T  20538097 cataggggaccaaattggtacataaattaacgtttttttttagagaaactaatagaaaggactaaaactagtaatgaagcaaaacataggggaccaaatt 20537998  T
Q  112 gatacaaatcatagttaagggaccaaatttagacaatcaattaagttaag 161  Q
    |  |||||| ||||||| |||| |||||| | |  |||||||||||||||    
T  20537997 ggaacaaattatagttaggggatcaaattgataatatcaattaagttaag 20537948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 46 - 182
Target Start/End: Original strand, 20538144 - 20538280
Alignment:
Q  46 ttttttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgatacaaatcatagttaagggaccaaatttagac 145  Q
    |||||||||||||||||||||||| |||||||| |||||| | | |||||||||    || |||||||||||||| ||||||| |||| |||||| ||||    
T  20538144 ttttttgagagaaactaacagaaatgactaaaactagtaacggagcaaaacatagataactaaattgatacaaattatagttaggggatcaaattgagac 20538243  T
Q  146 aatcaattaagttaagcgatcggataattgaataagc 182  Q
    |||||||||| ||||  || ||| | |||||||||||    
T  20538244 aatcaattaaattaaaggaccgggtgattgaataagc 20538280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 46 - 160
Target Start/End: Complemental strand, 46003385 - 46003271
Alignment:
Q  46 ttttttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgatacaaatcatagttaagggaccaaatttagac 145  Q
    |||||||||||||||||||| ||| |||||||| | ||||   | || ||||||  ||||||||||||||||||| ||||||| ||||||||||| | ||    
T  46003385 ttttttgagagaaactaacaaaaaggactaaaacttgtaacagaacagaacatagaggaccaaattgatacaaattatagttaggggaccaaattaaaac 46003286  T
Q  146 aatcaattaagttaa 160  Q
    |||||||||||||||    
T  46003285 aatcaattaagttaa 46003271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 46 - 183
Target Start/End: Complemental strand, 40364178 - 40364041
Alignment:
Q  46 ttttttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgatacaaatcatagttaagggaccaaatttagac 145  Q
    |||||||||||||||||||| ||| |||||||| || ||| | | ||||| | | |||| ||||||||||||||| ||| ||| ||||||||||| |||     
T  40364178 ttttttgagagaaactaacaaaaatgactaaaactaataacggagcaaaatacaggggatcaaattgatacaaattataattatgggaccaaattaagat 40364079  T
Q  146 aatcaattaagttaagcgatcggataattgaataagcc 183  Q
    |||||||||||||||| ||| || | || |||||||||    
T  40364078 aatcaattaagttaagggattgggtgatcgaataagcc 40364041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 61 - 161
Target Start/End: Original strand, 40364183 - 40364282
Alignment:
Q  61 taacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgatacaaatcatagttaagggaccaaatttagacaatcaattaagttaa 160  Q
    |||||||||  ||||||| |||||| | | ||||||||| |||| ||||||| ||||||| ||||||| | ||||||||| | |||||||||||||||||    
T  40364183 taacagaaatcactaaaactagtaacggaacaaaacata-gggatcaaattggtacaaattatagttaggagaccaaattgaaacaatcaattaagttaa 40364281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 40244874 - 40244935
Alignment:
Q  122 atagttaagggaccaaatttagacaatcaattaagttaagcgatcggataattgaataagcc 183  Q
    ||||||| ||||||||||| |||||||||||||||||||| ||  || | ||||||||||||    
T  40244874 atagttaggggaccaaattgagacaatcaattaagttaagggacggggtgattgaataagcc 40244935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 32151274 - 32151315
Alignment:
Q  184 aaataaatattataagatattttagaaaattgtccttaatta 225  Q
    |||||||||||||||| | ||||| |||||||||||||||||    
T  32151274 aaataaatattataagttgttttataaaattgtccttaatta 32151315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 46003390 - 46003446
Alignment:
Q  61 taacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgataca 117  Q
    ||||||||| |||||||| |||||| ||| |||||||||  ||||||||||| ||||    
T  46003390 taacagaaaggactaaaactagtaacgaagcaaaacatagaggaccaaattggtaca 46003446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 101 - 161
Target Start/End: Original strand, 48867469 - 48867529
Alignment:
Q  101 gggaccaaattgatacaaatcatagttaagggaccaaatttagacaatcaattaagttaag 161  Q
    ||||||||||||| |||  | ||||||||||||||||||| ||| ||| || |||||||||    
T  48867469 gggaccaaattgacacacttaatagttaagggaccaaattgagaaaataaaataagttaag 48867529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 5e-36; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 46 - 182
Target Start/End: Complemental strand, 6474418 - 6474281
Alignment:
Q  46 ttttttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaa-cataagggaccaaattgatacaaatcatagttaagggaccaaatttaga 144  Q
    ||||||||||||||||||||||||||||||||| ||||||  || ||||| |||| ||||||||||||||| |||| ||||||| |||| |||||| |||    
T  6474418 ttttttgagagaaactaacagaaaagactaaaactagtaacaaagcaaaaacataggggaccaaattgatataaattatagttaggggatcaaattgaga 6474319  T
Q  145 caatcaattaagttaagcgatcggataattgaataagc 182  Q
    ||||||||||||||||| |||| | |||||||||||||    
T  6474318 caatcaattaagttaagggatccggtaattgaataagc 6474281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 22 - 180
Target Start/End: Complemental strand, 28715804 - 28715645
Alignment:
Q  22 accaaattgctatataagttaacgttttttg-agagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgatacaaat 120  Q
    ||||||||| ||||||||||||||||||||  |||||||||| |||||| |||||||| |||||| ||| ||||||||| ||||||||||||||||||||    
T  28715804 accaaattggtatataagttaacgttttttttagagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattgatacaaat 28715705  T
Q  121 catagttaagggaccaaatttagacaatcaattaagttaagcgatcggataattgaataa 180  Q
     ||||||| |  |||||||| | ||||| |||||||||||| || ||| | |||||||||    
T  28715704 tatagttaggaaaccaaattaaaacaattaattaagttaagggaccgggtgattgaataa 28715645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 30862403 - 30862537
Alignment:
Q  21 gaccaaattgctatataagttaacg--ttttttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgatacaa 118  Q
    |||||||||| || |||||||||||  ||||||||||||||||||||||||||||||||||||||||   | ||||||||||||||||||||||||||||    
T  30862403 gaccaaattggtacataagttaacgatttttttgagagaaactaacagaaaagactaaaattagtaacagagcaaaacataagggaccaaattgatacaa 30862502  T
Q  119 atcatagttaagggaccaaatttagacaatcaatt 153  Q
    || ||||||| || || ||||| | ||||||||||    
T  30862503 attatagttagggaacaaaattgaaacaatcaatt 30862537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 46 - 183
Target Start/End: Complemental strand, 41986047 - 41985910
Alignment:
Q  46 ttttttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgatacaaatcatagttaagggaccaaatttagac 145  Q
    ||||||||||||||||||| |||| |||||||||||||||  || ||||||||| ||||||||||||| |||||| ||||||| |||| |||||| ||||    
T  41986047 ttttttgagagaaactaacggaaaggactaaaattagtaacaaagcaaaacatatgggaccaaattgaaacaaattatagttaggggatcaaattgagac 41985948  T
Q  146 aatcaattaagttaagcgatcggataattgaataagcc 183  Q
    |||||||||||||||| ||  || | ||||||||||||    
T  41985947 aatcaattaagttaagggactgggtgattgaataagcc 41985910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 14 - 183
Target Start/End: Original strand, 6474458 - 6474627
Alignment:
Q  14 cataggggaccaaattgctatataagttaacgtttttt-gagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattg 112  Q
    |||| |||||||||||| || ||||||||||||||||| |||||||||||||| ||| |||||||| ||||||   | |||| ||||||||| ||||| |    
T  6474458 cataagggaccaaattggtacataagttaacgtttttttgagagaaactaacataaaggactaaaactagtaacagagcaaagcataagggagcaaatcg 6474557  T
Q  113 atacaaatcatagttaagggaccaaatttagacaatcaattaagttaagcgatcggataattgaataagcc 183  Q
     ||||| | ||||||| | ||||||||| |||||||||||||||||||| |||||| | ||||||||||||    
T  6474558 gtacaatt-atagttaggagaccaaattaagacaatcaattaagttaagggatcgggtgattgaataagcc 6474627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 46 - 183
Target Start/End: Original strand, 28715852 - 28715989
Alignment:
Q  46 ttttttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgatacaaatcatagttaagggaccaaatttagac 145  Q
    |||||||||||||||||||||||| |||||||| |||| |   | |||||| ||  ||||||||||| ||||||| ||||||| ||||||||||| ||||    
T  28715852 ttttttgagagaaactaacagaaatgactaaaactagtgactgagcaaaacttagaggaccaaattggtacaaattatagttaggggaccaaattaagac 28715951  T
Q  146 aatcaattaagttaagcgatcggataattgaataagcc 183  Q
    |||||||||||||||| || ||| ||||||||||||||    
T  28715952 aatcaattaagttaagggaccgggtaattgaataagcc 28715989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 47373633 - 47373461
Alignment:
Q  14 cataggggaccaaattgctatataagttaacgttttttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattga 113  Q
    |||||||||| |||||| || ||||||||||||||||||||||||||||||| ||| |||||||| ||| ||   | ||||||||| ||||||||||||     
T  47373633 cataggggactaaattggtacataagttaacgttttttgagagaaactaacataaatgactaaaactagcaacagagcaaaacataggggaccaaattgg 47373534  T
Q  114 tacaaat--catagttaagggaccaaatttagacaatcaattaagttaagcgatcggataattgaataagcca 184  Q
    |||||||   ||| |||  ||| |||||| |||||||||||||||||||| |||||  | |||||||||||||    
T  47373533 tacaaattatataattagaggatcaaattgagacaatcaattaagttaagagatcgagtgattgaataagcca 47373461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 46 - 183
Target Start/End: Complemental strand, 30862355 - 30862218
Alignment:
Q  46 ttttttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgatacaaatcatagttaagggaccaaatttagac 145  Q
    |||||| ||||||  |||||||| ||||||||| ||||||  || ||||| ||| |||||||||||| ||||||| ||||||| ||||||||||| ||||    
T  30862355 tttttttagagaacttaacagaatagactaaaactagtaacaaagcaaaatataggggaccaaattggtacaaattatagttaggggaccaaattcagac 30862256  T
Q  146 aatcaattaagttaagcgatcggataattgaataagcc 183  Q
    |||||||||||||||| || || || ||||||||||||    
T  30862255 aatcaattaagttaagggaccgaatgattgaataagcc 30862218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 39 - 161
Target Start/End: Original strand, 47373665 - 47373787
Alignment:
Q  39 gttaacgttttttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgatacaaatcatagttaagggaccaaa 138  Q
    ||||||||||||| ||||||||||||| ||| || ||||| ||||||   ||||||||||| | ||| |||||| ||||||| ||| ||| |||||||||    
T  47373665 gttaacgttttttaagagaaactaacataaaggattaaaactagtaacacatcaaaacatatgagactaaattggtacaaattataattaggggaccaaa 47373764  T
Q  139 tttagacaatcaattaagttaag 161  Q
    || ||||||||||||||||||||    
T  47373765 ttgagacaatcaattaagttaag 47373787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 22226666 - 22226719
Alignment:
Q  130 gggaccaaatttagacaatcaattaagttaagcgatcggataattgaataagcc 183  Q
    ||||||||||| ||||||||||||||| |||| |||| | | ||||||||||||    
T  22226666 gggaccaaattgagacaatcaattaagctaagggatcaggtgattgaataagcc 22226719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 183
Target Start/End: Original strand, 41986186 - 41986255
Alignment:
Q  114 tacaaatcatagttaagggaccaaatttagacaatcaattaagttaagcgatcggataattgaataagcc 183  Q
    ||||||| ||||||| |||| |||||| |||||| |||||||||||||  | ||| | ||||||||||||    
T  41986186 tacaaattatagttaggggatcaaattgagacaaacaattaagttaaggaaccgggtgattgaataagcc 41986255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 1903971 - 1903935
Alignment:
Q  37 aagttaacgttttttgagagaaactaacagaaaagac 73  Q
    ||||||||||||||||| | |||||||||||||||||    
T  1903971 aagttaacgttttttgacaaaaactaacagaaaagac 1903935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 43 - 183
Target Start/End: Original strand, 22912 - 23052
Alignment:
Q  43 acgttttttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgatacaaatcatagttaagggaccaaattta 142  Q
    ||||||||||||||||||||||||||| |||||||| |||||| | | |||||||||  ||| ||||||| ||||||| ||||||| ||||||||||| |    
T  22912 acgttttttgagagaaactaacagaaaggactaaaactagtaacggagcaaaacatagaggatcaaattggtacaaattatagttaggggaccaaattaa 23011  T
Q  143 gacaatcaattaagttaagcgatcggataattgaataagcc 183  Q
    ||||||||||||||||||| || ||| | ||||||||||||    
T  23012 gacaatcaattaagttaagggaccgggtgattgaataagcc 23052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0781 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 57 - 188
Target Start/End: Original strand, 5256 - 5387
Alignment:
Q  57 aaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattgatacaaatcatagttaagggaccaaatttagacaatcaattaag 156  Q
    ||||||||| ||| |||||||| || |||  || ||||||||| |||||||||||| ||||||| ||||||| ||||||||||| |||||||||||||||    
T  5256 aaactaacataaatgactaaaactaataacaaagcaaaacataggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaag 5355  T
Q  157 ttaagcgatcggataattgaataagccaaata 188  Q
    ||||| || ||||| |||||||||||||||||    
T  5356 ttaagggaccggatgattgaataagccaaata 5387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 14 - 183
Target Start/End: Complemental strand, 21249532 - 21249362
Alignment:
Q  14 cataggggaccaaattgctatataagttaacgtttttt-gagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaattg 112  Q
    |||| |||||||||||| || |||||||||| |||||| |||||||||||||||||| || ||||| |||||| ||| ||||||||| ||||| ||||||    
T  21249532 cataagggaccaaattggtacataagttaacatttttttgagagaaactaacagaaaggattaaaactagtaacgaagcaaaacataggggactaaattg 21249433  T
Q  113 atacaaatcatagttaagggaccaaatttagacaatcaattaagttaagcgatcggataattgaataagcc 183  Q
     ||||| | ||| ||| ||||||||||| ||||||||||||| | |||| || | | | ||||||||||||    
T  21249432 gtacaatttataattaggggaccaaattgagacaatcaattacggtaagggaccaggtgattgaataagcc 21249362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 21249572 - 21249637
Alignment:
Q  46 ttttttgagagaaactaacagaaaagactaaaattagtaatgaatcaaaacataagggaccaaatt 111  Q
    |||||| ||||||||||||||||| |||||||| || ||| | | ||||||||||  |||||||||    
T  21249572 tttttttagagaaactaacagaaaggactaaaactaataacggagcaaaacataaatgaccaaatt 21249637  T

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