View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18371_low_5 (Length: 594)
Name: NF18371_low_5
Description: NF18371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18371_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 13 - 578
Target Start/End: Original strand, 10462744 - 10463309
Alignment:
| Q |
13 |
aaaatatacaaatgttatggaattgtacccaattgttaaaaattcatcatgaaattcaactgataattaactcagatttggaaaaaatgtaggaagattg |
112 |
Q |
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| T |
10462744 |
aaaatatacaaatgttatggaattgtacccaattgttaaaaattcatcatgaaattcaactgataattaactcagatttggaaaaaatgtaggaagattg |
10462843 |
T |
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| Q |
113 |
attgaattcaatttataatgagcgcactagtaggacttaaacaagaaacttccatctcacagatggtatacagagaatttgtttagccacaatgttgaat |
212 |
Q |
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| T |
10462844 |
attgaattcaatttataatgagcgcactagtaggacttaaacaagaaacttccatctcacagatggtatacagagaatttgtttagccacaatgttgaat |
10462943 |
T |
|
| Q |
213 |
tagttattatagcttgataaatttatttaagctacttcatcaaaaaacaagatataccgcaaattctattgccagcagaagattaagatgaagcatgtga |
312 |
Q |
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| T |
10462944 |
tagttattatagcttgataaatttatttaagctacttcatcaaaaaacaagatataccgcaaattctattgccagcagaagattaagatgaagcatgtga |
10463043 |
T |
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| Q |
313 |
ctcacatgcacagcacataaacaatgaaaacgtagtatttaaatccatagcatcaggacaatcgtttttattannnnnnnaacaattagtaagcaaaaca |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
10463044 |
ctcacatgcacagcacataaacaatgaaaacgtagtatttaaatccatagcatcaggacaatcgtttttattatttttttaacaattagtaagcaaaaca |
10463143 |
T |
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| Q |
413 |
agacaatcattacttttagtttatactctttaaatcatctaaaagcaagatgcaaatgttcaacttgatccgtaaggttaggtaagcggcaagtaccatg |
512 |
Q |
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| T |
10463144 |
agacaatcattacttttagtttatactctttaaatcatctaaaagcaagatgcaaatgttcaacttgatccgtaaggttaggtaagcggcaagtaccatg |
10463243 |
T |
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| Q |
513 |
acgagaagcaaaattgacagcatagcgattattctatttttctgtttgaaagcaaagttattggtg |
578 |
Q |
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| T |
10463244 |
acgagaagcaaaattgacagcatagcaattattctatttttctgtttgaaagcaaagttattggtg |
10463309 |
T |
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