View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18371_low_6 (Length: 587)
Name: NF18371_low_6
Description: NF18371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18371_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 121 - 566
Target Start/End: Complemental strand, 12851438 - 12850993
Alignment:
| Q |
121 |
ccattggccactagtgtgaccataagatgagaagctcttaaatctttgtgacatatgatgggattggaaactacacacgcactactactgttacagagcc |
220 |
Q |
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| T |
12851438 |
ccattggccactagtgtgaccataagatgagaagctcttaaatctttgtgacatatgatgggattggaaactacacacgcactactactgttacagagcc |
12851339 |
T |
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| Q |
221 |
atggatccttccaaacgttgatgtctttaccgtcaccaatgtgccatctaagccttcctttaactaccacttcggaagagtggatactgcgtcacacata |
320 |
Q |
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| T |
12851338 |
atggatccttccaaacgttgatgtctttaccgtcaccaatgtgccatctaagccttcctttaactaccacttcggaagagtggatactgcctcacacata |
12851239 |
T |
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| Q |
321 |
gcttggattatgccataagtgagcctccattcttccatgttctttcctcatggtaaatttttctcaacttagccaattaattcctctaccagtgcctcta |
420 |
Q |
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| T |
12851238 |
gcttggattatgccataagtgagcctccattcttccatgttctttcctcatggtaagtttttctcaacttagccaattaattcctctacaagtgcctcta |
12851139 |
T |
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| Q |
421 |
ttcacccccacaaaaatgaattaatcattcttcccatttcctctcccaacgacgatggtattaaaactgtgctcatgcaacatgtagggatcgcctgagc |
520 |
Q |
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| T |
12851138 |
ttcacctccaccaaaatgaattaatcattctttccattttctctcccaacgacaatggtattaaaattgtgctcatgcaacatgtagggatcgcatgagc |
12851039 |
T |
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| Q |
521 |
aacagatttaacaaggacctctctgcccactttggagagatgctta |
566 |
Q |
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| T |
12851038 |
aacagatttaacaaggacctctctgcccgctttggagagatgctta |
12850993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 14 - 125
Target Start/End: Complemental strand, 12857304 - 12857193
Alignment:
| Q |
14 |
catcacggctatgcatccaagtaggttgatctctcatatgccctagaggaattttcggttccgtctatgtcgcgtttctgagacatcgttgatagcacgc |
113 |
Q |
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| T |
12857304 |
catcacggctatgcatccaagtaggttgatctctcatatgccctagaggaattttcggttccgtctatgtcgcgtttctgagacatcgttgacagcacgc |
12857205 |
T |
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| Q |
114 |
ctaggtgccatt |
125 |
Q |
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| T |
12857204 |
ctaggtgccatt |
12857193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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