View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18371_low_7 (Length: 552)

Name: NF18371_low_7
Description: NF18371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18371_low_7
NF18371_low_7
[»] chr2 (8 HSPs)
chr2 (87-552)||(40085207-40085690)
chr2 (1-250)||(40059209-40059469)
chr2 (279-552)||(40059529-40059805)
chr2 (327-552)||(40077659-40077885)
chr2 (1-52)||(40085147-40085198)
chr2 (1-44)||(40077237-40077280)
chr2 (161-198)||(1830152-1830189)
chr2 (162-198)||(42419906-42419942)
[»] chr4 (10 HSPs)
chr4 (402-486)||(22015826-22015910)
chr4 (160-198)||(15173222-15173260)
chr4 (99-149)||(20005958-20006008)
chr4 (161-198)||(22662171-22662208)
chr4 (161-198)||(22666650-22666687)
chr4 (161-198)||(25571372-25571409)
chr4 (161-198)||(27043750-27043787)
chr4 (161-198)||(41336873-41336910)
chr4 (162-194)||(52315118-52315150)
chr4 (161-193)||(52428782-52428814)
[»] chr7 (3 HSPs)
chr7 (99-149)||(35052814-35052864)
chr7 (161-198)||(30812251-30812288)
chr7 (161-198)||(44822071-44822108)
[»] chr3 (7 HSPs)
chr3 (161-198)||(25447165-25447202)
chr3 (161-198)||(29114538-29114575)
chr3 (162-198)||(26911704-26911740)
chr3 (163-198)||(33405114-33405149)
chr3 (99-149)||(53322651-53322700)
chr3 (507-552)||(53322734-53322779)
chr3 (161-197)||(26990145-26990181)
[»] chr5 (7 HSPs)
chr5 (161-200)||(17369314-17369353)
chr5 (99-149)||(12735614-12735664)
chr5 (99-149)||(12798441-12798491)
chr5 (161-198)||(9107203-9107240)
chr5 (161-198)||(32010058-32010095)
chr5 (161-198)||(32197846-32197883)
chr5 (161-197)||(40111382-40111418)
[»] chr1 (4 HSPs)
chr1 (99-149)||(14124357-14124407)
chr1 (156-198)||(30257797-30257839)
chr1 (161-198)||(6292605-6292642)
chr1 (162-199)||(17009503-17009540)
[»] chr8 (2 HSPs)
chr8 (161-198)||(14280341-14280378)
chr8 (161-198)||(38602440-38602477)
[»] chr6 (3 HSPs)
chr6 (161-198)||(4308890-4308927)
chr6 (161-198)||(7785664-7785701)
chr6 (161-198)||(30536885-30536922)
[»] scaffold0110 (1 HSPs)
scaffold0110 (167-203)||(33839-33875)


Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 87 - 552
Target Start/End: Original strand, 40085207 - 40085690
Alignment:
Q  87 cattgcttgcaggaaaagaaaacaagtgtctatgttaagctgaattgctaattattgaaagcatgactgaacaagtttggattgacttatttgactttat 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  40085207 cattgcttgcaggaaaagaaaacaagtgtctatgttaagctgaattgctaattgttgaaagcatgactgaacaagtttggattgacttatttgagtttat 40085306  T
Q  187 ctactgacataatctctccaagatagataatcaaacatattaactatatgaaaacaatatgactctaaaatcttttgtaaatagaataagcactta---- 282  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  40085307 ctactgacataatctctccaagatagataatgaaacatattaactatatgaaaacaatatgactctaaaatcttttgtaaatagaataagcacttatatg 40085406  T
Q  283 -------------attaagtattttatccaaacatgatcttgatctactataagctaagaaaggctatcttaattcattgaaatgaaatggatttt-gca 368  Q
                 ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||    
T  40085407 ttataagcacttaattaagtattttatccaaatatgatcttgatctactataagctaagaaagtctatcttaattcattgaaatgaaatggatttttgca 40085506  T
Q  369 gtatgattttgatgggaggaaggatttggtgaaatttgtgaaagcagtagctgaggcaggtctatatgtgcatctccggattggtccatatgtttgttct 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40085507 gtatgattttgatgggaggaaggatttggtgaaatttgtgaaagcagtagctgaggcaggtctatatgtgcatctccggattggtccatatgtttgttct 40085606  T
Q  469 gaatggaactatgggtaatgtttggtaatttatgtgtattatatttcgggggtgttcatgtctaattgagggctttaacttctt 552  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  40085607 gaatggaactatgggtaaagtttggtaatttatgtgtattatatttcgagggtgttcatgtctaattgagggctttaacttctt 40085690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 40059209 - 40059469
Alignment:
Q  1 tctctttgcttcatttcttctctcacattcttaccattttcttttagcattgtattgaatttgttcatgtgtgaaggaaaagtttgcattgcttgcagga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  40059209 tctctttgcttcatttcttctctcacattcttaccattttctttgagcattgtattgaatttgttcatgtgtgaaggaaaagtttgcattgcttgcagaa 40059308  T
Q  101 aaagaaaacaagtgtctatgttaagctgaattgctaattattgaaagcatgactgaaca------------agtttggattgacttatttgactttatct 188  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||             |||||||||||||||||||| |||||||    
T  40059309 aaagaaaacaagtgtctatgttaagccgaattgctaattgttgaaagcatgactgaacacatttttagactcgtttggattgacttatttgagtttatct 40059408  T
Q  189 actgacataatctctccaagatagataatcaaacatattaactatatgaaaacaatatgact 250  Q
    ||||||||||||||||||||||||||||| ||| ||| ||| ||||||||||||||||||||    
T  40059409 actgacataatctctccaagatagataatgaaa-ataataattatatgaaaacaatatgact 40059469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 279 - 552
Target Start/End: Original strand, 40059529 - 40059805
Alignment:
Q  279 cttaattaagtattttatccaaacatgatcttgatctactataagctaagaaaggctatcttaattcattgaaatgaaatggatttt-gcagtatgattt 377  Q
    |||||| ||||| |||||||||||||| | |||||||||| |||| | |||||| ||||  ||||||| |||||||||||||||||| ||||||||||||    
T  40059529 cttaataaagtagtttatccaaacatggtgttgatctactgtaaggttagaaagactattataattcactgaaatgaaatggatttttgcagtatgattt 40059628  T
Q  378 tgatgggaggaaggatttggtgaaatttgtgaaagcagtagctgaggcaggtctatatgtgcatctccggattggtccatatgtttgttctgaatggaac 477  Q
    |||||||||||||||||| |||||||||||||| ||||| |||||||| || ||||||||||||||||| || ||||||||||||||| |||||||||||    
T  40059629 tgatgggaggaaggatttagtgaaatttgtgaaggcagtggctgaggcgggactatatgtgcatctccgcatcggtccatatgtttgtgctgaatggaac 40059728  T
Q  478 tatgggtaa----tgtttggtaatttatgtgtattatatttcgggggtgttcatgtctaattgagggctttaacttctt 552  Q
    |||||||||    || ||||||||||||||||  ||| |||| ||||||||||  |||||| |||||||||||||||||    
T  40059729 tatgggtaaagtttggttggtaatttatgtgtgatatttttctggggtgttca--tctaatcgagggctttaacttctt 40059805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 327 - 552
Target Start/End: Original strand, 40077659 - 40077885
Alignment:
Q  327 agaaaggctatcttaattcattgaaatgaaatggatttt-gcagtatgattttgatgggaggaaggatttggtgaaatttgtgaaagcagtagctgaggc 425  Q
    |||||| ||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| || ||||| ||||||||    
T  40077659 agaaagactattataattcattgaaatgaaatggatttttgcagtatgattttgatgggaggaaggatttagtgaaatttgtaaaggcagtggctgaggc 40077758  T
Q  426 aggtctatatgtgcatctccggattggtccatatgtttgttctgaatggaactatgggtaatgtttggtaatttatgtgtattatatttcgggggtgttc 525  Q
    ||| |||||||||||||||||||| ||||||||||| ||| ||||||||||||| |||||| |||||||  ||| |||||||||| |||| | |||||||    
T  40077759 aggactatatgtgcatctccggatcggtccatatgtgtgtgctgaatggaactacgggtaaagtttggtcctttctgtgtattatttttctgtggtgttc 40077858  T
Q  526 atgtctaattgagggctttaacttctt 552  Q
    |||||||||||||||||||||||||||    
T  40077859 atgtctaattgagggctttaacttctt 40077885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 40085147 - 40085198
Alignment:
Q  1 tctctttgcttcatttcttctctcacattcttaccattttcttttagcattg 52  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  40085147 tctctttgcttcatttcttctcttacattcttaccattttctttgagcattg 40085198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 40077237 - 40077280
Alignment:
Q  1 tctctttgcttcatttcttctctcacattcttaccattttcttt 44  Q
    ||||||||||||||||||||||||||||| |||||| |||||||    
T  40077237 tctctttgcttcatttcttctctcacatttttaccactttcttt 40077280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 198
Target Start/End: Complemental strand, 1830189 - 1830152
Alignment:
Q  161 gtttggattgacttatttgactttatctactgacataa 198  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  1830189 gtttggattgacttatttgagtttatttactgacataa 1830152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 42419942 - 42419906
Alignment:
Q  162 tttggattgacttatttgactttatctactgacataa 198  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  42419942 tttggattgacttatttgagtttatcttctgacataa 42419906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 402 - 486
Target Start/End: Complemental strand, 22015910 - 22015826
Alignment:
Q  402 atttgtgaaagcagtagctgaggcaggtctatatgtgcatctccggattggtccatatgtttgttctgaatggaactatgggtaa 486  Q
    ||||||||| |||||||| |  |||||| ||||||||||||||||||| ||||||||||| ||| |||||||||| || ||||||    
T  22015910 atttgtgaaggcagtagcagcagcaggtttatatgtgcatctccggatcggtccatatgtgtgtgctgaatggaattacgggtaa 22015826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 15173222 - 15173260
Alignment:
Q  160 agtttggattgacttatttgactttatctactgacataa 198  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  15173222 agtttggattgacttatttgaacttatctactgacataa 15173260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 149
Target Start/End: Original strand, 20005958 - 20006008
Alignment:
Q  99 gaaaagaaaacaagtgtctatgttaagctgaattgctaattattgaaagca 149  Q
    ||||||||||||||||| ||| | || ||||||| ||||||||||||||||    
T  20005958 gaaaagaaaacaagtgtgtatatcaaactgaatttctaattattgaaagca 20006008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 198
Target Start/End: Original strand, 22662171 - 22662208
Alignment:
Q  161 gtttggattgacttatttgactttatctactgacataa 198  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  22662171 gtttggattgacttatttgagtttatctactaacataa 22662208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 198
Target Start/End: Original strand, 22666650 - 22666687
Alignment:
Q  161 gtttggattgacttatttgactttatctactgacataa 198  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  22666650 gtttggattgacttatttgagtttatctactaacataa 22666687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 198
Target Start/End: Complemental strand, 25571409 - 25571372
Alignment:
Q  161 gtttggattgacttatttgactttatctactgacataa 198  Q
    |||||||||| ||||||||| |||||||||||||||||    
T  25571409 gtttggattggcttatttgagtttatctactgacataa 25571372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 198
Target Start/End: Original strand, 27043750 - 27043787
Alignment:
Q  161 gtttggattgacttatttgactttatctactgacataa 198  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  27043750 gtttggattgacttatttgagcttatctactgacataa 27043787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 198
Target Start/End: Complemental strand, 41336910 - 41336873
Alignment:
Q  161 gtttggattgacttatttgactttatctactgacataa 198  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  41336910 gtttggattgacttatttgagtttatctactcacataa 41336873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 162 - 194
Target Start/End: Original strand, 52315118 - 52315150
Alignment:
Q  162 tttggattgacttatttgactttatctactgac 194  Q
    ||||||||||||||||||| |||||||||||||    
T  52315118 tttggattgacttatttgagtttatctactgac 52315150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 161 - 193
Target Start/End: Complemental strand, 52428814 - 52428782
Alignment:
Q  161 gtttggattgacttatttgactttatctactga 193  Q
    |||||||||||||||||||| ||||||||||||    
T  52428814 gtttggattgacttatttgagtttatctactga 52428782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 99 - 149
Target Start/End: Complemental strand, 35052864 - 35052814
Alignment:
Q  99 gaaaagaaaacaagtgtctatgttaagctgaattgctaattattgaaagca 149  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  35052864 gaaaagaaaacaagtgtgtatgttaagctgaattgctaattgttgaaagca 35052814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 198
Target Start/End: Complemental strand, 30812288 - 30812251
Alignment:
Q  161 gtttggattgacttatttgactttatctactgacataa 198  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  30812288 gtttggattgacttatttgagtttacctactgacataa 30812251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 198
Target Start/End: Complemental strand, 44822108 - 44822071
Alignment:
Q  161 gtttggattgacttatttgactttatctactgacataa 198  Q
    |||||||||||||||||||| ||||||| |||||||||    
T  44822108 gtttggattgacttatttgagtttatctgctgacataa 44822071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 161 - 198
Target Start/End: Original strand, 25447165 - 25447202
Alignment:
Q  161 gtttggattgacttatttgactttatctactgacataa 198  Q
    |||||||||||||||||||| |||||||||||||||||    
T  25447165 gtttggattgacttatttgagtttatctactgacataa 25447202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 161 - 198
Target Start/End: Complemental strand, 29114575 - 29114538
Alignment:
Q  161 gtttggattgacttatttgactttatctactgacataa 198  Q
    |||| |||||||||||||||||||||||||||||||||    
T  29114575 gtttcgattgacttatttgactttatctactgacataa 29114538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 26911740 - 26911704
Alignment:
Q  162 tttggattgacttatttgactttatctactgacataa 198  Q
    ||||||||||||||||||| |||||||||||||||||    
T  26911740 tttggattgacttatttgagtttatctactgacataa 26911704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 198
Target Start/End: Original strand, 33405114 - 33405149
Alignment:
Q  163 ttggattgacttatttgactttatctactgacataa 198  Q
    |||||||||||||||||| |||||||||||||||||    
T  33405114 ttggattgacttatttgagtttatctactgacataa 33405149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 149
Target Start/End: Original strand, 53322651 - 53322700
Alignment:
Q  99 gaaaagaaaacaagtgtctatgttaagctgaattgctaattattgaaagca 149  Q
    ||||||||||||||||| ||| |||| |||||||||||||| |||||||||    
T  53322651 gaaaagaaaacaagtgtgtat-ttaatctgaattgctaattgttgaaagca 53322700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 552
Target Start/End: Original strand, 53322734 - 53322779
Alignment:
Q  507 ttatatttcgggggtgttcatgtctaattgagggctttaacttctt 552  Q
    |||| |||| ||||| ||||| ||||||||||||||||||||||||    
T  53322734 ttatttttctggggtcttcatttctaattgagggctttaacttctt 53322779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 26990145 - 26990181
Alignment:
Q  161 gtttggattgacttatttgactttatctactgacata 197  Q
    ||||||||||||||||||||  |||||||||||||||    
T  26990145 gtttggattgacttatttgagcttatctactgacata 26990181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 200
Target Start/End: Complemental strand, 17369353 - 17369314
Alignment:
Q  161 gtttggattgacttatttgactttatctactgacataatc 200  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  17369353 gtttggattgacttatttgaacttatctactgacataatc 17369314  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 149
Target Start/End: Complemental strand, 12735664 - 12735614
Alignment:
Q  99 gaaaagaaaacaagtgtctatgttaagctgaattgctaattattgaaagca 149  Q
    |||||||||||||| || ||| |||||||||||| |||||| |||||||||    
T  12735664 gaaaagaaaacaagcgtgtatattaagctgaatttctaattgttgaaagca 12735614  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 149
Target Start/End: Complemental strand, 12798491 - 12798441
Alignment:
Q  99 gaaaagaaaacaagtgtctatgttaagctgaattgctaattattgaaagca 149  Q
    |||||||||||||| || ||| |||||||||||| |||||| |||||||||    
T  12798491 gaaaagaaaacaagcgtgtatattaagctgaatttctaattgttgaaagca 12798441  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 198
Target Start/End: Complemental strand, 9107240 - 9107203
Alignment:
Q  161 gtttggattgacttatttgactttatctactgacataa 198  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  9107240 gtttggattgacttatttgagtttatctagtgacataa 9107203  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 198
Target Start/End: Complemental strand, 32010095 - 32010058
Alignment:
Q  161 gtttggattgacttatttgactttatctactgacataa 198  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  32010095 gtttggattgacttatttgagtttatctactcacataa 32010058  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 198
Target Start/End: Complemental strand, 32197883 - 32197846
Alignment:
Q  161 gtttggattgacttatttgactttatctactgacataa 198  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  32197883 gtttggattgacttttttgagtttatctactgacataa 32197846  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 40111418 - 40111382
Alignment:
Q  161 gtttggattgacttatttgactttatctactgacata 197  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  40111418 gtttcgattgacttatttgagtttatctactgacata 40111382  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 149
Target Start/End: Complemental strand, 14124407 - 14124357
Alignment:
Q  99 gaaaagaaaacaagtgtctatgttaagctgaattgctaattattgaaagca 149  Q
    ||||||||||||||||| ||| | || ||||||| ||||||||||||||||    
T  14124407 gaaaagaaaacaagtgtgtatatcaaactgaatttctaattattgaaagca 14124357  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 30257839 - 30257797
Alignment:
Q  156 aacaagtttggattgacttatttgactttatctactgacataa 198  Q
    ||||| |||||||| |||||||||| |||||||||||||||||    
T  30257839 aacaaatttggatttacttatttgagtttatctactgacataa 30257797  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 198
Target Start/End: Complemental strand, 6292642 - 6292605
Alignment:
Q  161 gtttggattgacttatttgactttatctactgacataa 198  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  6292642 gtttggattgacttatttgagcttatctactgacataa 6292605  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 17009503 - 17009540
Alignment:
Q  162 tttggattgacttatttgactttatctactgacataat 199  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  17009503 tttgaattgacttatttgagtttatctactgacataat 17009540  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 198
Target Start/End: Original strand, 14280341 - 14280378
Alignment:
Q  161 gtttggattgacttatttgactttatctactgacataa 198  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  14280341 gtttggattgacttatttgattttatctactggcataa 14280378  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 198
Target Start/End: Complemental strand, 38602477 - 38602440
Alignment:
Q  161 gtttggattgacttatttgactttatctactgacataa 198  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  38602477 gtttggattgacttatttgagcttatctactgacataa 38602440  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 198
Target Start/End: Complemental strand, 4308927 - 4308890
Alignment:
Q  161 gtttggattgacttatttgactttatctactgacataa 198  Q
    |||||||||| ||||||||| |||||||||||||||||    
T  4308927 gtttggattggcttatttgagtttatctactgacataa 4308890  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 198
Target Start/End: Original strand, 7785664 - 7785701
Alignment:
Q  161 gtttggattgacttatttgactttatctactgacataa 198  Q
    |||||||||| ||||||||| |||||||||||||||||    
T  7785664 gtttggattgtcttatttgaatttatctactgacataa 7785701  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 198
Target Start/End: Original strand, 30536885 - 30536922
Alignment:
Q  161 gtttggattgacttatttgactttatctactgacataa 198  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  30536885 gtttggattgacttatttgagtttatctacttacataa 30536922  T

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Target: scaffold0110 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 33839 - 33875
Alignment:
Q  167 attgacttatttgactttatctactgacataatctct 203  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  33839 attgacttatttgaatttatctactgacataagctct 33875  T

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