View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18371_low_8 (Length: 550)
Name: NF18371_low_8
Description: NF18371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18371_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 456; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 18 - 538
Target Start/End: Original strand, 37375020 - 37375531
Alignment:
| Q |
18 |
tatcctagatacagcaacggtattattttgattttctgctataactttatcatctat----ttatttatgtattataaattcacaagtatgtcagtagat |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37375020 |
tatcctagatacagcaacggtattattttgattttctgctataactttatcatctatatatttatttatgtattataaattcacaagtatgtcagtagat |
37375119 |
T |
|
| Q |
114 |
taactcaaataagcaactttaaaataagcaaattcagagagacaatctaaaacaaaagttcttattgaccttttcttgtgatatactagggtgctgctta |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37375120 |
taactcaaataagcaactttaaaataagcaaattcagagagacaatctaaaacaaaagttcttattgaccttttcttgtgatatactagggtgctgctta |
37375219 |
T |
|
| Q |
214 |
tcaagaacttggtcgagtatggtatgcaaaagacatagcaatccaacaaaggcgttgttcatggatgtctaatggtttcatgagtgtaaatacaaggtta |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37375220 |
tcaagaacttggtcgagtatggtatgcaaaagacatagcaatccaacaaaggcgttgttcatggatgtctaatggtttcatgagtgtaaatacaaggtta |
37375319 |
T |
|
| Q |
314 |
ggagcagggagagcttttttgagatctcttcatgagcagtatgctgcttggggtgttgatcttggtactggcactactaacttactgtctcaacattttt |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37375320 |
ggagcagggagagcttttttgagatctcttcatgagcagtatgctgcttggggtgttgatcttggtactggcactactaacttactgtctcaacattttt |
37375419 |
T |
|
| Q |
414 |
atcatatcattgacaacaatcatgatgattttaaatctacaaagtattgattgattatacattcatgtattaatttaaatttgcatcgtcatgtacaaga |
513 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37375420 |
atcat-------------atcatgatgattttaaatctacaaagtattgattgattatacattcatgtattaatttaaatttgcattatcatgtacaaga |
37375506 |
T |
|
| Q |
514 |
atatatagacagttctgcctatgct |
538 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
37375507 |
atatatagacagttctgcctatgct |
37375531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 32 - 538
Target Start/End: Original strand, 37382373 - 37382881
Alignment:
| Q |
32 |
caacggtattattttgattttctgctataactttatcatctatttatttatgtattataaattcacaagtatgtcagtagattaactcaaataagcaact |
131 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| || ||||| || ||||||||||||||||| |||||| ||| ||| ||||||||||||| | | |
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| T |
37382373 |
caacggtattattttgattctctgctataactttatcttcaatttaattctgtattataaattcacatgtatgtaagtggataaactcaaataagcgaat |
37382472 |
T |
|
| Q |
132 |
ttaaaataagcaaattcagagagaca----atctaaaacaaaagttcttattgaccttttcttgtgatatactagggtgctgcttatcaagaacttggtc |
227 |
Q |
| |
|
| ||||||||| |||||| ||||||| | ||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||| ||||| |
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|
| T |
37382473 |
tcaaaataagccaattcaaagagacacgtaacctaaaacaaaagttcttattgaccttttcacgtgatttcctagggtgctgcttatcaagaatctggtc |
37382572 |
T |
|
| Q |
228 |
gagtatggtatgcaaaagacatagcaatccaacaaaggcgttgttcatggatgtctaatggtttcatgagtgtaaatacaaggttaggagcagggagagc |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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|
| T |
37382573 |
gagtatggtatgcaaaagacatagcaatccaagaaaggcgttgtgcatggatgtctaatggtttcatgagtgtaaatacaaagttaggagcaggaagagc |
37382672 |
T |
|
| Q |
328 |
ttttttgagatctcttcatgagcagtatgctgcttggggtgttgatcttggtactggcactactaacttactgtctcaacatttttatcatatcattgac |
427 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
37382673 |
ttttttgagatctctttatgcacagtatgctgcttggggtgttgatcttggtactggcactactaacttactgtcacaacatttttatcatatcattgac |
37382772 |
T |
|
| Q |
428 |
aacaatcatgatgattttaaatctacaaagtattgattgattatacattcatgtattaatttaaatttgcatcgtcatgtacaagaatatatagacagtt |
527 |
Q |
| |
|
|||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||| | |||||| |||||||||||| ||||| |||||| |
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|
| T |
37382773 |
aacaatcatgatgattttgaatttacaaactattgattgattatacattcatgtattaatttggaattgcattatcatgtacaaga--atatacacagtt |
37382870 |
T |
|
| Q |
528 |
ctgcctatgct |
538 |
Q |
| |
|
|||||||||| |
|
|
| T |
37382871 |
ttgcctatgct |
37382881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 461
Target Start/End: Original strand, 37360198 - 37360650
Alignment:
| Q |
18 |
tatcctagatacagcaacggtattattttgattttctgctataactttatcatctatttat--ttatgtattataaattcacaagtatgtcagtagatta |
115 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||| ||||| |||||| |||||||||||| ||||||||| | |
|
|
| T |
37360198 |
tatcctagatacaacaacggtattattttgattttctgctataactttatcttctatatatatttatgcattatacattcacaagtatatcagtagataa |
37360297 |
T |
|
| Q |
116 |
actcaaataagcaactttaaaataagcaaattcagagagaca----atctaaaacaaaagtt---cttattgaccttttcttgtgatatactagggtgct |
208 |
Q |
| |
|
|||| ||||||||| || |||||||| |||||| ||||||| ||||| || |||||||||||||||||| ||||| |||||||| |
|
|
| T |
37360298 |
actcgaataagcaatttcaaaataaggcaattcaaagagacacataatctatttttttttttatccttattgaccttttcttgcgatatcacagggtgct |
37360397 |
T |
|
| Q |
209 |
gcttatcaagaacttggtcgagtatggtatgcaaaagacatagcaatccaacaaaggcgttgttcatggatgtctaatggtttcatgagtgtaaatacaa |
308 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| | ||||||||||||||||||||||||| |
|
|
| T |
37360398 |
gcttatcaagaatctggtcgagtatggcatgcaaaagacatagcaatccaagaaaggcgttgtggatggatgacaaatggtttcatgagtgtaaatacaa |
37360497 |
T |
|
| Q |
309 |
ggttaggagcagggagagcttttttgagatctcttcatgagcagtatgctgcttggggtgttgatcttggtactggcactactaacttactgtctcaaca |
408 |
Q |
| |
|
||||||||| |||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||| |
|
|
| T |
37360498 |
cgttaggagccgggaaagcatttttgagatcccttcatgagcagtatgctgcttggggtgttgatcttggtactcgcacaactaactaactgtctcaaca |
37360597 |
T |
|
| Q |
409 |
tttttatcatatcattgacaacaatcatgatgattttaaatctacaaagtatt |
461 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37360598 |
tttttatcatgttattgacaacaatcatgatgatttgaaatctacaaagtatt |
37360650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 461
Target Start/End: Complemental strand, 37367866 - 37367412
Alignment:
| Q |
18 |
tatcctagatacagcaacggtattattttgattttctgctataactttatcatctatttat--ttatgtattataaattcacaagtatgtcagtagatta |
115 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||| ||||| |||||| || ||||||||| ||||||||| | |
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|
| T |
37367866 |
tatcctagatacaacaacggtattattttgattttctgctataactttatcttctatatatatttatgcattatacatacacaagtatatcagtagataa |
37367767 |
T |
|
| Q |
116 |
actcaaataagcaactttaaaataagcaaattcagagagacaa----tctaaaacaaaagtt-----cttattgaccttttcttgtgatatactagggtg |
206 |
Q |
| |
|
|||| ||||||||| || |||||||| |||||| ||||||| ||||| || |||||||||||||||||| ||||| |||||| |
|
|
| T |
37367766 |
actcgaataagcaatttcaaaataaggcaattcaaagagacacatattctaattttttttttttatccttattgaccttttcttgcgatatcacagggtg |
37367667 |
T |
|
| Q |
207 |
ctgcttatcaagaacttggtcgagtatggtatgcaaaagacatagcaatccaacaaaggcgttgttcatggatgtctaatggtttcatgagtgtaaatac |
306 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| | ||||||||||||||||||||||| |
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|
| T |
37367666 |
ctgcttatcaagaatcaggtcgagtatggcatgcaaaagacatagcaatccaagaaaggcgttgtggatggatgacaaatggtttcatgagtgtaaatac |
37367567 |
T |
|
| Q |
307 |
aaggttaggagcagggagagcttttttgagatctcttcatgagcagtatgctgcttggggtgttgatcttggtactggcactactaacttactgtctcaa |
406 |
Q |
| |
|
|| ||||||||| |||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||| |
|
|
| T |
37367566 |
aacgttaggagccgggaaagcatttttgagatcccttcatgagcagtatgctgcttggggtgttgatcttggtactcgcacaactaactaactgtctcaa |
37367467 |
T |
|
| Q |
407 |
catttttatcatatcattgacaacaatcatgatgattttaaatctacaaagtatt |
461 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
37367466 |
catttttatcatgttattgacaacaatcatgatgatttgaaatctaaaaagtatt |
37367412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 269 - 381
Target Start/End: Complemental strand, 37386455 - 37386342
Alignment:
| Q |
269 |
tgttcatggatgtctaatggtttcatgagtgtaaatacaaggttaggagcagggagagcttttttgagatctcttcatgagcagtatgctgctt-ggggt |
367 |
Q |
| |
|
|||||||||||| || ||||||||||| |||||| ||| |||||| ||||||||||||||||||||||| ||| |||||||||||||||||| ||||| |
|
|
| T |
37386455 |
tgttcatggatgcaaaacggtttcatgagagtaaatgcaacgttaggtgcagggagagcttttttgagatccctttatgagcagtatgctgcttgggggt |
37386356 |
T |
|
| Q |
368 |
gttgatcttggtac |
381 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
37386355 |
gttgatcttggtac |
37386342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 197 - 381
Target Start/End: Complemental strand, 41230039 - 41229855
Alignment:
| Q |
197 |
tactagggtgctgcttatcaagaacttggtcgagtatggtatgcaaaagacatagcaatccaacaaaggcgttgttcatggatgtctaatggtttcatga |
296 |
Q |
| |
|
|||||||| | ||||||||||||| |||||| || ||| ||||||||||||||||||||| | |||| |||| ||||||| ||||||||||||| |
|
|
| T |
41230039 |
tactagggcggtgcttatcaagaatctggtcgtgtgtggcatgcaaaagacatagcaatcccaaaaagagcttgtggatggatgcagaatggtttcatga |
41229940 |
T |
|
| Q |
297 |
gtgtaaatacaaggttaggagcagggagagcttttttgagatctcttcatgagcagtatgctgcttggggtgttgatcttggtac |
381 |
Q |
| |
|
||||| |||||| ||||| ||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41229939 |
gtgtagatacaacattaggggcagggagagcgtttttgagatccctttatgagcagtatgctgcttggggtgttgatcttggtac |
41229855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 451 - 489
Target Start/End: Complemental strand, 41229754 - 41229716
Alignment:
| Q |
451 |
tacaaagtattgattgattatacattcatgtattaattt |
489 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
41229754 |
tacaaagtattgattgattatacattcatgtgttaattt |
41229716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 233 - 382
Target Start/End: Original strand, 39243773 - 39243922
Alignment:
| Q |
233 |
tggtatgcaaaagacatagcaatccaacaaaggcgttgttcatggatgtctaatggtttcatgagtgtaaatacaaggttaggagcagggagagcttttt |
332 |
Q |
| |
|
||||||||||||||||||| |||| ||||| |||| |||||| || |||||||||||||||||||||| | ||| || || || | ||| |||| |
|
|
| T |
39243773 |
tggtatgcaaaagacatagggatccctgaaagggcttgtggctggatgactcatggtttcatgagtgtaaatactacgttgggtgctggcaaagcctttt |
39243872 |
T |
|
| Q |
333 |
tgagatctcttcatgagcagtatgctgcttggggtgttgatcttggtact |
382 |
Q |
| |
|
|||| || ||| ||| ||||||||||| |||||||||||| |||||||| |
|
|
| T |
39243873 |
tgaggtccctttatgtgcagtatgctgaatggggtgttgattttggtact |
39243922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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