View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18372_high_2 (Length: 289)
Name: NF18372_high_2
Description: NF18372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18372_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 14 - 274
Target Start/End: Original strand, 8974961 - 8975221
Alignment:
| Q |
14 |
ttcttcaaggaccacccgagaatttcatagaacagttaccaatgttggtcaaggaaaatcgatttatgttgctcacattactcgaatcgaagggttccat |
113 |
Q |
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||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8974961 |
ttcttcaaggaccacccaagaatttcatagaacaattaccaatgttggtcaaggaaaatcgatttatgttgctcacattactcgaatcgaagggttccat |
8975060 |
T |
|
| Q |
114 |
gttacagttatcccaaataagttggtgttcaataagaaaaacgagaaattaagctacaagttgaggattgaagatgcaagaatggcacaaaagaatgaag |
213 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8975061 |
gttagagttatcccaaataagttggtgttcaataagaaaaacgagaaattaagctacaagttgaggattgaagatgcaagagtggcacaaaagaatgaag |
8975160 |
T |
|
| Q |
214 |
tttcttttggatatctcacttggcaggatgggaagcatgtggtgaggagccctattgttgt |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8975161 |
tttcttttggatatctcacttggcaggatgggaagcatgtggtaaggagccctattgttgt |
8975221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 14 - 271
Target Start/End: Original strand, 8963565 - 8963822
Alignment:
| Q |
14 |
ttcttcaaggaccacccgagaatttcatagaacagttaccaatgttggtcaaggaaaatcgatttatgttgctcacattactcgaatcgaagggttccat |
113 |
Q |
| |
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|||| ||||||| ||| ||||||||| || |||||||||||||||||| ||||| || || ||||||||||| |||||||| ||| ||||| ||| || |
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| T |
8963565 |
ttctccaaggacagcccaagaatttcacaggacagttaccaatgttggtgaaggacaaacggtttatgttgctagcattactccaattgaaggcttcaat |
8963664 |
T |
|
| Q |
114 |
gttacagttatcccaaataagttggtgttcaataagaaaaacgagaaattaagctacaagttgaggattgaagatgcaagaatggcacaaaagaatgaag |
213 |
Q |
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| T |
8963665 |
gtcggtgttattccaaataggttggtgttcaatgagaagaatgagaagctaagctacaggttgaggattgaacaccgacgaatgacacagaagaatgaat |
8963764 |
T |
|
| Q |
214 |
tttcttttggatatctcacttggcaggatgggaagcatgtggtgaggagccctattgt |
271 |
Q |
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| T |
8963765 |
tatcttttggatatctcacttggaagaatgggaagcatgtggtgaggagccctattgt |
8963822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 14 - 271
Target Start/End: Complemental strand, 8945519 - 8945262
Alignment:
| Q |
14 |
ttcttcaaggaccacccgagaatttcatagaacagttaccaatgttggtcaaggaaaatcgatttatgttgctcacattactcgaatcgaagggttccat |
113 |
Q |
| |
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|||||||||| ||| || ||||||||| ||||||||||||||||||||| | ||| || | |||||||||||| ||||| | | ||||| | || | |
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| T |
8945519 |
ttcttcaagggccatccaagaatttcacagaacagttaccaatgttggtgagggacaagccatttatgttgctagcattatgcctgttgaaggataccgt |
8945420 |
T |
|
| Q |
114 |
gttacagttatcccaaataagttggtgttcaataagaaaaacgagaaattaagctacaagttgaggattgaagatgcaagaatggcacaaaagaatgaag |
213 |
Q |
| |
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|||| | |||||||||||||||| ||||||||||||| || |||| |||||||||||||||||||||||| | |||||| ||||||| ||||||| |
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| T |
8945419 |
gttagtgctatcccaaataagttgatgttcaataagaagaatgagatgctaagctacaagttgaggattgaaggccctagaatgacacaaaataatgaag |
8945320 |
T |
|
| Q |
214 |
tttcttttggatatctcacttggcaggatgggaagcatgtggtgaggagccctattgt |
271 |
Q |
| |
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| ||||||| || |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8945319 |
tagcttttggttacatcacatggcaggatgggaagcatgtggtgaggagccctattgt |
8945262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 14 - 256
Target Start/End: Original strand, 8958551 - 8958793
Alignment:
| Q |
14 |
ttcttcaaggaccacccgagaatttcatagaacagttaccaatgttggtcaaggaaaatcgatttatgttgctcacattactcgaatcgaagggttccat |
113 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||| |||||||||||||| | ||| || | |||||||| || |||||||| | |||||||||||| |
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| T |
8958551 |
ttcttcaaggacaacccaagaatttcatagaacaattaccaatgttggtgagggagaaacagtttatgtttctagcattactcaggttgaagggttccat |
8958650 |
T |
|
| Q |
114 |
gttacagttatcccaaataagttggtgttcaataagaaaaacgagaaattaagctacaagttgaggattgaagatgcaagaatggcacaaaagaatgaag |
213 |
Q |
| |
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|| | ||||||||||| |||||||| |||||| |||| || |||||| |||||||||||||||||||||||| ||||||| | || ||| ||| ||| |
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| T |
8958651 |
gtcagtgttatcccaaacaagttggtattcaatgagaagaatgagaaactaagctacaagttgaggattgaagtggcaagaacgacaaaaatgaagaaag |
8958750 |
T |
|
| Q |
214 |
tttcttttggatatctcacttggcaggatgggaagcatgtggt |
256 |
Q |
| |
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| ||||||| ||||| |||||| |||| |||||||||||| |
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| T |
8958751 |
tggcttttgggtatctaacttggatggatacgaagcatgtggt |
8958793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 186
Target Start/End: Complemental strand, 9947928 - 9947818
Alignment:
| Q |
76 |
tttatgttgctcacattactcgaatcgaagggttccatgttacagttatcccaaataagttggtgttcaataagaaaaacgagaaattaagctacaagtt |
175 |
Q |
| |
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|||||||||| ||||||||| ||| ||||||| ||||| | ||||||||||| |||||||||||| || |||| || ||||| |||| | ||||| |
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| T |
9947928 |
tttatgttgccaacattactcctatcaaagggtttcatgtcagtgttatcccaaacaagttggtgttccatgagaagaatgagaagctaagatttaagtt |
9947829 |
T |
|
| Q |
176 |
gaggattgaag |
186 |
Q |
| |
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||||| ||||| |
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| T |
9947828 |
gaggaatgaag |
9947818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 103 - 271
Target Start/End: Complemental strand, 21686596 - 21686428
Alignment:
| Q |
103 |
aagggttccatgttacagttatcccaaataagttggtgttcaataagaaaaacgagaaattaagctacaagttgaggattgaagatgcaagaatggcaca |
202 |
Q |
| |
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||||||||| ||| || ||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||||| ||| |||| |||||||| |||| |
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| T |
21686596 |
aagggttccgtgtcactgttattccaaataagttggtgttcaagaagaagaacgagaagataagctacaagttgaagatcgaaggcccaagaatgacaca |
21686497 |
T |
|
| Q |
203 |
aaagaatgaagtttcttttggatatctcacttggcaggatgggaagcatgtggtgaggagccctattgt |
271 |
Q |
| |
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||||||| |||| | || || || ||| |||||| ||||||||| |||||||| |||||||||||||| |
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| T |
21686496 |
aaagaataaagtagccttcggttacctctcttggcgggatgggaaacatgtggttaggagccctattgt |
21686428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 32 - 271
Target Start/End: Complemental strand, 34962284 - 34962045
Alignment:
| Q |
32 |
agaatttcatagaacagttaccaatgttggtcaaggaaaatcgatttatgttgctcacattactcgaatcgaagggttccatgttacagttatcccaaat |
131 |
Q |
| |
|
|||||||| |||||||||||||||||||||| | ||| || | |||||||||||| |||| ||| ||| ||||||| | ||| || ||||||||||| |
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| T |
34962284 |
agaatttcgtagaacagttaccaatgttggtgacggacaagcaatttatgttgctagcattgctccaattaaagggtttcgtgtcactgttatcccaaac |
34962185 |
T |
|
| Q |
132 |
aagttggtgttcaataagaaaaacgagaaattaagctacaagttgaggattgaagatgcaagaatggcacaaaagaatgaagtttcttttggatatctca |
231 |
Q |
| |
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|| |||||||| ||| |||| || ||||| |||||||||| ||||||||||||| |||||| ||| || || || |||| ||||||||||||| | |
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| T |
34962184 |
aatttggtgtttaatgagaagaatgagaagctaagctacaaattgaggattgaagttgcaagtatgacaaaattaaagaaagtggcttttggatatctaa |
34962085 |
T |
|
| Q |
232 |
cttggcaggatgggaagcatgtggtgaggagccctattgt |
271 |
Q |
| |
|
| ||| ||||| ||||||||| || ||||| |||||||| |
|
|
| T |
34962084 |
catggatggatgtgaagcatgttgttaggagtcctattgt |
34962045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 49008801 - 49008841
Alignment:
| Q |
102 |
gaagggttccatgttacagttatcccaaataagttggtgtt |
142 |
Q |
| |
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|||||||||||||||| ||||||||||| ||||||||||| |
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|
| T |
49008801 |
gaagggttccatgttagtgttatcccaaacaagttggtgtt |
49008841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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