View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18372_low_2 (Length: 311)
Name: NF18372_low_2
Description: NF18372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18372_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 301
Target Start/End: Original strand, 42318920 - 42319203
Alignment:
| Q |
18 |
ttttgcacgtgttaccatcttcctctacgctctaaccctatcaactgcgtttcaccgccatgaaaacttgattcaggacgtggctagaaagcttgagctc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42318920 |
ttttgcacgtgttaccatcttcctctacgctctaaccctatcaactgcgtttcaccgccatgaaaacttgattcaggacgtggctagaaagcttgagctc |
42319019 |
T |
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| Q |
118 |
aaagacaacgaacttctcaaaactgagaagaagttcaaagttttcatgcaagattactccaaaagttactctacaagggaagagtatttactacgccttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42319020 |
aaagacaacgaacttctcaaaactgagaagaagttcaaagttttcatgcaagattactccaaaagttactctacaagggaagagtatttactacgccttg |
42319119 |
T |
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| Q |
218 |
ggatttttgccaaaaacttggtcaaagctgtggaacaccaagcacttgatccaaccgccattcatggtgttactcagttctctg |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42319120 |
ggatttttgccaaaaacttggtcaaagctgtggaacaccaagcacttgatccaaccgccattcatggtgttactcagttctctg |
42319203 |
T |
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