View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18373_high_3 (Length: 570)

Name: NF18373_high_3
Description: NF18373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18373_high_3
NF18373_high_3
[»] chr3 (10 HSPs)
chr3 (172-502)||(6942439-6942776)
chr3 (227-500)||(6787945-6788229)
chr3 (301-502)||(6939399-6939601)
chr3 (53-186)||(6788244-6788376)
chr3 (310-421)||(8467036-8467147)
chr3 (499-565)||(6942806-6942874)
chr3 (107-184)||(50302422-50302500)
chr3 (499-565)||(6939631-6939699)
chr3 (311-362)||(41035956-41036007)
chr3 (137-277)||(8466882-8467021)
[»] chr8 (2 HSPs)
chr8 (307-402)||(5354180-5354275)
chr8 (306-368)||(5508953-5509015)
[»] chr1 (2 HSPs)
chr1 (307-360)||(34564857-34564910)
chr1 (307-355)||(30526203-30526251)
[»] chr5 (1 HSPs)
chr5 (303-381)||(28362656-28362734)
[»] chr2 (1 HSPs)
chr2 (312-408)||(33720155-33720255)
[»] chr4 (1 HSPs)
chr4 (315-401)||(48681542-48681628)


Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 172 - 502
Target Start/End: Original strand, 6942439 - 6942776
Alignment:
Q  172 aagaaaaagatttaagaggaatatgactgtttatattggtttccctaccaacgttaacatggcatgtcgcccataagtatgttagaacagcaaacccgtt 271  Q
    |||||||| ||||||||||||| | || ||||| ||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||  |||    
T  6942439 aagaaaaacatttaagaggaatgtaacagtttacattggtttccctaccaatgttaacatggcatgttacccataagtatgttagaacagcaaactggtt 6942538  T
Q  272 caaaaatcaaaagattaaagaaaaagtaaa------taatgaacacacgatgtttggtaacgaaattcggccaatattgcctacgtctccgactgcaaag 365  Q
    |||||||||||| |||||||||| ||||||      |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||    
T  6942539 caaaaatcaaaaaattaaagaaacagtaaacgcaaataatgaacacacgatgtttggtaacgaagttcagccaatattgcctacgtctccgactgcagag 6942638  T
Q  366 cagctgctgttcctttttatcatgagtgaaagattaaggtttacaatgcacaacttgtgcataaacgc--ttgtccagattacaacatcacccctgaacc 463  Q
    ||||||| |||||||||||| ||||| |||||| ||| ||||||||||||||||||||| |||||| |  |||||||||||||||||||| |||||||||    
T  6942639 cagctgcagttcctttttattatgagagaaagagtaatgtttacaatgcacaacttgtgtataaacactattgtccagattacaacatcaaccctgaacc 6942738  T
Q  464 gtaccccccagtcgccatcacacaacaaactatgatacc 502  Q
    ||| ||||||||||||||||  |||||||||||||||||    
T  6942739 gta-cccccagtcgccatcatgcaacaaactatgatacc 6942776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 227 - 500
Target Start/End: Complemental strand, 6788229 - 6787945
Alignment:
Q  227 aacatggcatgtcgcccataagtatgttagaacagcaaacccgttcaaaaatcaaaagattaaagaaaaagtaaa------taatgaacacacgatgttt 320  Q
    |||||| || || |||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||      |||| ||||||||||||||    
T  6788229 aacatgtcacgttgcccataagtatgttagatcagcaaacccgttcaaaaatcaaaagataaaagacaaagtaaacgcaaataataaacacacgatgttt 6788130  T
Q  321 ggtaacgaaattcggccaatattgcctacgtctccgactgcaaagcagctgctgttcctttttatcatgagtgaaagattaaggtttacaatgcacaact 420  Q
    ||||||||| ||||||||||||||||||| |||||||||||| || |||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  6788129 ggtaacgaagttcggccaatattgcctacatctccgactgcagagaagctgcagttcctttttattatgagtgaaagattaaggtttacaatgcacaact 6788030  T
Q  421 tgtgcataa------acgcttgtccagattacaacatcacccctgaaccgtaccccccagtcgccatcacacaacaaactatgata 500  Q
    |||| ||||      ||  |||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||    
T  6788029 tgtgtataattaaacactattgtccagattacaacatcacccctgaaccata-cccccagtcgccattacacaacaaactatgata 6787945  T

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Target: chr3; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 301 - 502
Target Start/End: Original strand, 6939399 - 6939601
Alignment:
Q  301 ataatgaacacacgatgtttggtaacgaaattcggccaatattgcctacgtctccgactgcaaagcagctgctgttcctttttatcatgagtgaaagatt 400  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||| |||||| |    
T  6939399 ataatgaacacacgatgtttggtaacgaagttcagccaatattgcctacgtctccgactgcagagcagctgcagttcctttttattatgagagaaagagt 6939498  T
Q  401 aaggtttacaatgcacaacttgtgcat--aaacgcttgtccagattacaacatcacccctgaaccgtaccccccagtcgccatcacacaacaaactatga 498  Q
    || |||||||||||||||| |||| ||  ||||  |||||||||||||||||||| || ||||||||| ||||||||||||||||| |||||||||||||    
T  6939499 aatgtttacaatgcacaacgtgtgtataaaaactattgtccagattacaacatcaaccgtgaaccgta-cccccagtcgccatcacgcaacaaactatga 6939597  T
Q  499 tacc 502  Q
    ||||    
T  6939598 tacc 6939601  T

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Target: chr3; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 53 - 186
Target Start/End: Complemental strand, 6788376 - 6788244
Alignment:
Q  53 aaatgtagcagcatgtagttaaagtacttgtgtaacatagagactgattaaaactgaaacaagatttgtattactgaatagagatgattaca----acaa 148  Q
    |||||||||||||||| |||||||||||||     ||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||    ||||    
T  6788376 aaatgtagcagcatgttgttaaagtacttg-----cattgagactgcttaaaactgaaacaagatttgtattactggatagagatgattacaatttacaa 6788282  T
Q  149 cacaattagagaacaatggagcgaagaaaaagatttaa 186  Q
    ||||||||||||||||| || |||||||||||||||||    
T  6788281 cacaattagagaacaatagatcgaagaaaaagatttaa 6788244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 310 - 421
Target Start/End: Original strand, 8467036 - 8467147
Alignment:
Q  310 acacgatgtttggtaacgaaattcggccaatattgcctacgtctccgactgcaaagcagctgctgttcctttttatcatgagtgaaagattaaggtttac 409  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||| | || |||||| |||||||| ||| || | |||||||||| |||||||    
T  8467036 acacaatgtttggtaacgaagttcggccaatattgcctacgtctccgactgtagagaagctgcagttcctttgtattatcaatgaaagattagggtttac 8467135  T
Q  410 aatgcacaactt 421  Q
    | ||||||||||    
T  8467136 agtgcacaactt 8467147  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 499 - 565
Target Start/End: Original strand, 6942806 - 6942874
Alignment:
Q  499 taccctctttgaactttgaatgttt--ctttatcatcatctactgatctttcctccgattcttctcact 565  Q
    ||||||||||||||||||||| |||  ||||||||||||||||| ||||||||||| |||||| |||||    
T  6942806 taccctctttgaactttgaatttttttctttatcatcatctactcatctttcctccaattcttatcact 6942874  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 50302500 - 50302422
Alignment:
Q  107 tgaaacaagatttgtattactgaatagaga-tgattacaacaacacaattagagaacaatggagcgaagaaaaagattt 184  Q
    |||||||  ||||||||||||||||||||| ||||||||| |||| | |||||||| ||||||| |||||||| |||||    
T  50302500 tgaaacataatttgtattactgaatagagactgattacaataacaaagttagagaaaaatggagagaagaaaaggattt 50302422  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 499 - 565
Target Start/End: Original strand, 6939631 - 6939699
Alignment:
Q  499 taccctctttgaactttgaatgttt--ctttatcatcatctactgatctttcctccgattcttctcact 565  Q
    ||||||||||||||||||||| |||  ||||||||||||||||| || |||||||| |||||| |||||    
T  6939631 taccctctttgaactttgaatttttttctttatcatcatctactcatatttcctccaattcttatcact 6939699  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 311 - 362
Target Start/End: Original strand, 41035956 - 41036007
Alignment:
Q  311 cacgatgtttggtaacgaaattcggccaatattgcctacgtctccgactgca 362  Q
    |||||||||||||||||||||||| |||||  |||||||||||| |||||||    
T  41035956 cacgatgtttggtaacgaaattcgtccaattgtgcctacgtctcagactgca 41036007  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 137 - 277
Target Start/End: Original strand, 8466882 - 8467021
Alignment:
Q  137 tgattacaacaacacaattagagaacaatggagcgaagaaaaagatttaagaggaatatgactgtttatattggtttccctaccaacgttaacatggcat 236  Q
    |||||||||||||| ||   ||||| ||| ||| |||||||||||||| || ||||| |||| ||||| | ||| |||||| |||| || ||||| |  |    
T  8466882 tgattacaacaacagaa---gagaaaaatagagggaagaaaaagatttgagtggaatgtgacagtttaaaatggattcccttccaatgtaaacattgtgt 8466978  T
Q  237 gtcgcccataa--gtatgttagaacagcaaacccgttcaaaaa 277  Q
    || ||| ||||   ||||||||||||||||||| |||||||||    
T  8466979 gttgccaataaatatatgttagaacagcaaaccagttcaaaaa 8467021  T

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Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 307 - 402
Target Start/End: Original strand, 5354180 - 5354275
Alignment:
Q  307 aacacacgatgtttggtaacgaaattcggccaatattgcctacgtctccgactgcaaagcagctgctgttcctttttatcatgagtgaaagattaa 402  Q
    ||||||| ||||||||||||||| |||||||||| |||||||| |||| |||| |||||||||||  |||||||| ||| ||  |||||| |||||    
T  5354180 aacacacaatgtttggtaacgaagttcggccaattttgcctacttctctgactacaaagcagctgtagttcctttgtattatcggtgaaaaattaa 5354275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 306 - 368
Target Start/End: Original strand, 5508953 - 5509015
Alignment:
Q  306 gaacacacgatgtttggtaacgaaattcggccaatattgcctacgtctccgactgcaaagcag 368  Q
    |||||||| ||| ||||||||||||||| |||||| ||||||||  |||| |||||| |||||    
T  5508953 gaacacacaatgcttggtaacgaaattcagccaattttgcctacacctccaactgcagagcag 5509015  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 360
Target Start/End: Complemental strand, 34564910 - 34564857
Alignment:
Q  307 aacacacgatgtttggtaacgaaattcggccaatattgcctacgtctccgactg 360  Q
    ||||||||||||||||||||||| |||||||||  |||||||||||||||||||    
T  34564910 aacacacgatgtttggtaacgaagttcggccaaatttgcctacgtctccgactg 34564857  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 307 - 355
Target Start/End: Original strand, 30526203 - 30526251
Alignment:
Q  307 aacacacgatgtttggtaacgaaattcggccaatattgcctacgtctcc 355  Q
    ||||||||||||||||||||||| || | |||||  |||||||||||||    
T  30526203 aacacacgatgtttggtaacgaagtttgaccaattgtgcctacgtctcc 30526251  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 303 - 381
Target Start/End: Complemental strand, 28362734 - 28362656
Alignment:
Q  303 aatgaacacacgatgtttggtaacgaaattcggccaatattgcctacgtctccgactgcaaagcagctgctgttccttt 381  Q
    |||||||||||||||||||||||| || ||   ||||| ||||||| ||||| ||||||| ||||||||| ||||||||    
T  28362734 aatgaacacacgatgtttggtaacaaagtttaaccaattttgcctatgtctcagactgcagagcagctgcagttccttt 28362656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 312 - 408
Target Start/End: Complemental strand, 33720255 - 33720155
Alignment:
Q  312 acgatgtttggtaacgaaattcggccaatattgcctacgtctccgactgca----aagcagctgctgttcctttttatcatgagtgaaagattaaggttt 407  Q
    |||||||||| ||||||| |||||||||| |||||||| ||||||||||||     ||||||||| |||||||| ||| ||  ||||||| ||| |||||    
T  33720255 acgatgtttgataacgaagttcggccaattttgcctacatctccgactgcagagcgagcagctgcagttcctttctattatctgtgaaagtttagggttt 33720156  T
Q  408 a 408  Q
    |    
T  33720155 a 33720155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 315 - 401
Target Start/End: Complemental strand, 48681628 - 48681542
Alignment:
Q  315 atgtttggtaacgaaattcggccaatattgcctacgtctccgactgcaaagcagctgctgttcctttttatcatgagtgaaagatta 401  Q
    ||||||||||| ||| |||||||||| ||| || ||||||||| |||| ||  ||||| |||||||| ||| || |||| |||||||    
T  48681628 atgtttggtaatgaagttcggccaattttgtctgcgtctccgaatgcagagtggctgcagttcctttatattatcagtggaagatta 48681542  T

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