View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18373_high_6 (Length: 353)
Name: NF18373_high_6
Description: NF18373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18373_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 17 - 343
Target Start/End: Complemental strand, 17106346 - 17106020
Alignment:
| Q |
17 |
aactgtgagcttttctctttttatatagtgggtccagccaaatgttaattgattctgcattgttgctattattacctgtttagcctacattttgccacat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17106346 |
aactgtgagcttttctctttttatatagtgggtccagccaaatgttaattgattctgcattgttgctattattacctgtttagcctacattttgccacat |
17106247 |
T |
|
| Q |
117 |
ggttgttatggtttatcttggtaataactaattaatgtgggaccctctcaagcttctatgtacatcgtcattttgtattaatcaatttttatttttactc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17106246 |
ggttgttatggtttatcttggtaataactaattaatgtgggaccctctcaagcttctatgtacatcgtcattttgtattaatcaatttttatttttactc |
17106147 |
T |
|
| Q |
217 |
tatgaatttttgctaattagtgtcataatgatatggttaagaaatccattaatataaattttacttttaaatacttcttccgtcttatattaaatgactt |
316 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17106146 |
tatgaatttttgctaattagtgtcctaatgatatggttaagaaatccattaatataaattttacttttaaatacttcttccgtcttatattaaatgactt |
17106047 |
T |
|
| Q |
317 |
atttgacaatgtgcactgacatctctg |
343 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
17106046 |
atttgacaatgtgcactgacatctctg |
17106020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University