View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18373_high_7 (Length: 290)
Name: NF18373_high_7
Description: NF18373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18373_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 31937194 - 31937464
Alignment:
| Q |
1 |
gccatgaatcctcggtttgctgggaaccaaaatgagtatgctaggtcaaatgattcaatggtacgtaa-catgtcatatactatgttgtacatgtttatt |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
31937194 |
gccatgaatcctcggtttgctgggaaccaaaatgagtatgctaggtcaaatgattcaatggtacgtaaacatgtcatatactatgttgtacatgtttatt |
31937293 |
T |
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| Q |
100 |
ggtagcatgtatgtttcaaaaatcacgtttgatannnnnnnnn-aaagtgcaacttgtgaaaacacaggtggataatgaaaaccctggagttataaatag |
198 |
Q |
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| T |
31937294 |
gttagcatgtatgtttcaaaaatcacgtttgatactttttttttaaagtgcaacttgtgaaaacacaggtggataatgaaaaccctggagttataaatag |
31937393 |
T |
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| Q |
199 |
tgtacctggtggcatgggagcatccatggcaactgcgactgcagatcgagttaagaaaaacaaatgaagtg |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31937394 |
tgtacctggtggcatgggagcatccatggcaactgcgactgcagatcgagttaagaaaaacaaatgaagtg |
31937464 |
T |
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