View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18373_low_1 (Length: 582)
Name: NF18373_low_1
Description: NF18373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18373_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 519; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 1 - 571
Target Start/End: Complemental strand, 36223449 - 36222879
Alignment:
| Q |
1 |
tttgttccaaaagttatccctgcaaaagttttaacatagaccttagggacaattttgacttgttttaagttcaatcgtctcgaggaggatgacgatgcaa |
100 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36223449 |
tttgttccaaaagttatccctgcaaatgttttaacatagaccttagggacaattttgacttgttttaagttcaatcgtctcgaggaggatgacgatgcaa |
36223350 |
T |
|
| Q |
101 |
aggccgcaattgcaatttcagtctccaaagttactcaggtgactctttaatacttattagattgttgttgtgggaattgatgtttgttctcttgcaagct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36223349 |
aggccgcaattgcaatttcagtctccaaagttactcaggtgactctttaatacttattagattgttgttgtgggaattgatgtttgttctcttgcaagct |
36223250 |
T |
|
| Q |
201 |
gaataattgttttgttcaatgtgcagacactagaagtgcttgagttgtctaaataaatcaaagataagttgaaaggaactgataaatatggtataattct |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36223249 |
gaataattgttttgttcaatgtgcagacactagaagtgcttgagttgtctaaataaatcaaagataagttgaaaggaactgataaatatggtataattct |
36223150 |
T |
|
| Q |
301 |
tacttttgttgtattttaattcaagttagtt-gnnnnnnngagtagttaaaaacagttagtttttggttagctattttgatggagttagttagttttgat |
399 |
Q |
| |
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||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36223149 |
tacttttgttgtattttaattcaagttagttggaaaaaaagagtagttaaaaacagttagtttttggttagctattttgatggagttagttag-tttgat |
36223051 |
T |
|
| Q |
400 |
tgattacttgtattgcaagtaagcgacataagtagttgtatataagcttgtaatctcagattttcattactaatgagaacatagtttacaatcacattga |
499 |
Q |
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|
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36223050 |
tgattacttgtattgcaagtaagccatataagtagttgtatataagcttgtaatctcagattttcattactaatgagaacatagtttacaatcacattga |
36222951 |
T |
|
| Q |
500 |
tttctctttcttctcttttgatttctcctaattctctcccaatcttgattgcttgtgaatgaagtgatctct |
571 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36222950 |
tttctctttcttctctcttgatttctcctaattctctcccaatcttgattgcttgtgaatgaagtgatctct |
36222879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 341 - 571
Target Start/End: Complemental strand, 36227157 - 36226925
Alignment:
| Q |
341 |
agtagttaaaaacagttagtttttggttagctattttgatggagttagttagttttgattgattacttgtattgcaagtaagcgacataagtagttgtat |
440 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||| |||||||| ||| ||| |
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| T |
36227157 |
agtagttaaaaacagttagttgtttgttagctattttgatcgagttggttggttttgattgattacttgtattgcaagtaagccacataagttgtt-tat |
36227059 |
T |
|
| Q |
441 |
ataagcttgtaatctcagattttcattac----taatgagaacatagtttacaatcacattgatttctctttcttctcttttgatttctcctaattctct |
536 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| || ||||| ||||||||||| |
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| T |
36227058 |
ataagcttgtaatcttagattttcattactaaataatgagaacatagtttacaatcacattgatctctctttcttctctctt-atttcccctaattctct |
36226960 |
T |
|
| Q |
537 |
cccaatcttgattgcttgtgaatgaagtgatctct |
571 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||| |
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| T |
36226959 |
cccaatctcgattgcttgtgaatgaagtaatctct |
36226925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 77 - 212
Target Start/End: Complemental strand, 36227322 - 36227185
Alignment:
| Q |
77 |
gtctcgaggaggatgacgatgcaaaggccgcaattgcaatttcagtctccaaagttactcaggtgactctttaatacttattagattgttgttg--tggg |
174 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
36227322 |
gtctcgaggaggatgacgatgcaaaggctgcaattgcaatttcagtctccaaactcactcaggtgactctttagtacttattagattgttgttgtatggg |
36227223 |
T |
|
| Q |
175 |
aattgatgtttgttctcttgcaagctgaataattgttt |
212 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||||| |
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| T |
36227222 |
agttgatgtttgttctcttgcaagctgaacaattgttt |
36227185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 498
Target Start/End: Original strand, 13575506 - 13575558
Alignment:
| Q |
447 |
ttgtaatctcagattttcatt-actaatgagaacatagtttacaatcacattg |
498 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||| | ||||||||||||||| |
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| T |
13575506 |
ttgtaatctctaattttcattcactaatgagaacacactttacaatcacattg |
13575558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 349 - 491
Target Start/End: Original strand, 28067302 - 28067445
Alignment:
| Q |
349 |
aaaacagttagtttttggttagctattttgatggagttagttagttttgattgattacttgtattgcaagtaagcgacataagtagttgtatataagctt |
448 |
Q |
| |
|
|||||||||| | || ||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||| | |||| || ||||||| || | | |
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|
| T |
28067302 |
aaaacagttattagtttgttagctattttgatggagttagttagttttgaataattacttgtattggaagtaagtcatataaataattgtataaaaacct |
28067401 |
T |
|
| Q |
449 |
gtaatctcagattttca-ttactaatgagaacatagtttacaat |
491 |
Q |
| |
|
||||||||| || |||| |||||||||| ||||||||||||||| |
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| T |
28067402 |
gtaatctcatatcttcatttactaatgaaaacatagtttacaat |
28067445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 39425950 - 39425909
Alignment:
| Q |
26 |
aagttttaacatagaccttagggacaattttgacttgtttta |
67 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39425950 |
aagttttaacatagatcttagggacaattttgacttgtttta |
39425909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 30547869 - 30547812
Alignment:
| Q |
85 |
gaggatgacgatgcaaaggccgcaattgcaatttcagtctccaaagttactcaggtga |
142 |
Q |
| |
|
|||||||| ||||| || ||||||||||||||||| || ||| ||||||||||||||| |
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|
| T |
30547869 |
gaggatgatgatgccaaagccgcaattgcaatttccgtatccgaagttactcaggtga |
30547812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 9300623 - 9300583
Alignment:
| Q |
25 |
aaagttttaacatagaccttagggacaattttgacttgttt |
65 |
Q |
| |
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|||||||||||||| || ||| ||||||||||||||||||| |
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|
| T |
9300623 |
aaagttttaacataaacattaaggacaattttgacttgttt |
9300583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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