View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18373_low_2 (Length: 572)
Name: NF18373_low_2
Description: NF18373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18373_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 561
Target Start/End: Original strand, 14034788 - 14035338
Alignment:
| Q |
18 |
agttccatgtgagccttgtgctatgaaccatacaacttccaagtgtagacgcaaacatgcaatcccgagtaccacgagtcctacaaatccataaaacctc |
117 |
Q |
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| T |
14034788 |
agttccatgtgagccttctgctatgaaccatacaacttcgaagtgtagacgcaaacatgcaatcccgggtaccacgagtcctacaaatccataaaacctc |
14034887 |
T |
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| Q |
118 |
gtgcaaggaaccctttgaaacatatggaacatacttgaactcatagaagggctcgacccatgtctaaacgcaaagtgtggtaaatctgagttgaacaaga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
14034888 |
atgcaaggaaccctttgaaacatatggaacatacttgaattcatagaaggactcgacccatgtctaaacgcaaagtgtggtaaatctgagtcgaagaaga |
14034987 |
T |
|
| Q |
218 |
cgatttacttaaaaaagaagataaagggtccacatgtcttcagatagaagtcatttcatta-tttaaagatgtcaaatacatgacggtacatcatcaaaa |
316 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
14034988 |
cgatttacttaaaatataagataaagggtccacatgtcttcagatagaagtcatttcattactcaaaagatgtcaaatacatgacggtacatcatcaaaa |
14035087 |
T |
|
| Q |
317 |
gatagaagttatttaacttgcaccaaatcgaaaccaaatcattatatttaggggaaattatcttt--nnnnnnntatttaggggaaattatattcgcctt |
414 |
Q |
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| T |
14035088 |
gatagaagttatttaacttgcaccaaatcgaaaccaaatcattatatttaggggaaattatctttcaaaaaaaatatttacgggaaattatattcgcctt |
14035187 |
T |
|
| Q |
415 |
tccaaagaaggtggatttattc------nnnnnnnnnngaaggtgaatataatttcttagnnnnnnntaaaatagaacatacatgttgcctttattgagt |
508 |
Q |
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| T |
14035188 |
tccaaagaaggtggatttattcaaaaaaaaagaaaaaagaaggtgaatataatttcttagaaaaaag-aaaatagaacatacatgttgcctttattgagt |
14035286 |
T |
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| Q |
509 |
ttggttcaatattttatgatattctctcacaaaatccattggttcattttcat |
561 |
Q |
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||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
14035287 |
ttggttc-atattttatgatattctctcacaaaatccattagttcattttcat |
14035338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 477 - 548
Target Start/End: Original strand, 14036490 - 14036561
Alignment:
| Q |
477 |
aaaatagaacatacatgttgcctttattgagtttggttcaatattttatgatattctctcacaaaatccatt |
548 |
Q |
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|||||||||||||||||||||||||||||| |||| || |||||||||||||| |||||||||||| |||| |
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| T |
14036490 |
aaaatagaacatacatgttgcctttattgattttgattatatattttatgatatcctctcacaaaattcatt |
14036561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 341 - 377
Target Start/End: Original strand, 14036414 - 14036450
Alignment:
| Q |
341 |
aaatcgaaaccaaatcattatatttaggggaaattat |
377 |
Q |
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| T |
14036414 |
aaatcgaaaccacaccattatatttaggggaaattat |
14036450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 313
Target Start/End: Original strand, 40286994 - 40287025
Alignment:
| Q |
282 |
aaagatgtcaaatacatgacggtacatcatca |
313 |
Q |
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| T |
40286994 |
aaagatgtcaaatacatgacggtacatcatca |
40287025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 313
Target Start/End: Original strand, 51080649 - 51080680
Alignment:
| Q |
282 |
aaagatgtcaaatacatgacggtacatcatca |
313 |
Q |
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| T |
51080649 |
aaagatgtcaaatacatgacggtacatcatca |
51080680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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